| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 241,111 – 241,204 |
| Length | 93 |
| Max. P | 0.692453 |
| Location | 241,111 – 241,204 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.31 |
| Mean single sequence MFE | -40.17 |
| Consensus MFE | -32.17 |
| Energy contribution | -32.00 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 241111 93 + 22407834 UGAUGGUGGCUUCCGUAACUAGGAGGCAUUCCCAUGUGCGGCGGCGGCAAUCCAGCACCCGGCAACUGUUGCUGCUGCAUUAGCGAGACGUGA-- ....((..((((((.......))))))...))(((((((.(((((((((((...((.....))....)))))))))))....))...))))).-- ( -36.20) >DroVir_CAF1 38857 95 + 1 UGAUGGUGACUGCCAUAGCUGGGCGGCAUGCCCAUGUGCGGCGGCGGCAGUACGGCGCCUGGCAGCUGCUGCUGCUGCAUCAGGCUCACAUGGUU .....((((..(((.....(((((.....))))).((((((((((((((((...((.....)).))))))))))))))))..)))))))...... ( -48.10) >DroSim_CAF1 34449 93 + 1 UGAUGGUGGCUUCCGUAACUAGGAGGCAUACCCAUAUGCGGUGGCGGCAAUCCGGCACCCGGCAACUGUUGCUGCUGCAUUAGCGAGACGUGA-- ....((((((((((.......)))))).))))...((((((..((((((..((((...))))....))))))..)))))).............-- ( -37.50) >DroYak_CAF1 36041 93 + 1 UGAUGGUGGCUUCCGUAACUAGGAGGCAUUCCCAUGUGCGGUGGCGGCAAUCCAGCACCCGGCAACUGCUGCUGCUGCAUUAGCGAAACGUGA-- ..((((..((((((.......))))))....))))((((((..((((((..((.......))....))))))..)))))).............-- ( -35.50) >DroMoj_CAF1 37427 95 + 1 UGAUGAUGGCUGCCAUAGCUGGGCGGCAUGCCCAUGUGCGGCGGCGGCAACACAGCGCCUGGCAGCUGCUGCUGCUGCAUUAGGCUCACGUGGUU .(((.(((((((((.......))))))..(((...((((((((((((((.(.(((...)))...).))))))))))))))..)))...))).))) ( -44.70) >DroAna_CAF1 39230 90 + 1 UGGUGGUGGCUGCCGUAGCUGGGGGGCAUGCCCAUGUGCGGUGGGGGCAGACCGGCACCCGGCAACUG---CUGUUGCAUCAGCGACACGUGU-- .((((.((((((((.(.((((..(((....))).....)))).).))))).))).)))).(....).(---(((((((....)))))).))..-- ( -39.00) >consensus UGAUGGUGGCUGCCGUAACUAGGAGGCAUGCCCAUGUGCGGCGGCGGCAAUCCAGCACCCGGCAACUGCUGCUGCUGCAUUAGCGACACGUGA__ ..((((..((((((.......))))))....))))((((((((((((((.....((.....))...))))))))))))))............... (-32.17 = -32.00 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:50 2006