Locus 6498

Sequence ID 2L_DroMel_CAF1
Location 18,259,715 – 18,259,814
Length 99
Max. P 0.718673
window10374

overview

Window 4

Location 18,259,715 – 18,259,814
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 94.85
Mean single sequence MFE -30.72
Consensus MFE -26.75
Energy contribution -26.75
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.87
SVM decision value 0.39
SVM RNA-class probability 0.718673
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18259715 99 + 22407834
CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGACAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA
.....((((((((...(((((.((((.....((..(..(.......)..)..))....)))).))))).....)))))).))................. ( -27.40)
>DroSec_CAF1 103111 99 + 1
CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGGCAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA
.....((((((((...(((((.((((.....((....)).......(......)....)))).))))).....)))))).))................. ( -28.00)
>DroSim_CAF1 108876 99 + 1
CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGGCAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA
.....((((((((...(((((.((((.....((....)).......(......)....)))).))))).....)))))).))................. ( -28.00)
>DroEre_CAF1 104332 98 + 1
CACAACGCAUGCUGAGAGCUCGGCCCUAGGAGCCAUGGCUAGAAGAGGAAGCGCAAGUGGGCGGAGCUGAG-GGGCGUGUCGGUGAAAGGAGCAGAAGA
(((...(((((((...(((((.((((....(((....)))..........((....)))))).)))))...-.)))))))..))).............. ( -36.30)
>DroYak_CAF1 108304 99 + 1
CACAACGCAUGCUGAGAGCUCGGCCCUGGGAGCCGUGGCAAGAAGAGGAGGCGCAAGUGGGCGGAGCUAAGAGGGCGUGUCGGUUAAAGAAGCAGAAGA
.....((((((((...(((((.((((.....((....))...........((....)))))).))))).....)))))).))................. ( -33.90)
>consensus
CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGGCAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA
.....((((((((...(((((.((((.....(((................).))....)))).))))).....)))))).))................. (-26.75 = -26.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:41 2006