Locus 6492

Sequence ID 2L_DroMel_CAF1
Location 18,242,969 – 18,243,066
Length 97
Max. P 0.885960
window10364

overview

Window 4

Location 18,242,969 – 18,243,066
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 89.64
Mean single sequence MFE -16.82
Consensus MFE -12.22
Energy contribution -12.50
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -2.48
Structure conservation index 0.73
SVM decision value 0.94
SVM RNA-class probability 0.885960
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18242969 97 + 22407834
GUCAACGGACAAAAAAAAAAAAAAAGGGAAAAAAUAGAUGUAGAAAAACAUAUAUUUAUGCCUGGGAAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU
(((....))).......................(((((((((........)))))))))((((((.(..((((.......))))...).)))))).. ( -16.50)
>DroSec_CAF1 86181 91 + 1
GUCAACGGAACAAA------AAAAAGGGAAAAAAUAGAUGUAUAAAAACACAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU
..............------...........(((((..(((......)))..)))))((((((((.((.((((.......))))...)))))))))) ( -14.40)
>DroSim_CAF1 90320 94 + 1
GUCAACGGACCAAAAA---AAAAAAGGGAAAAAAUAGAUGUAUAAAAACACAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU
(((....)))......---............(((((..(((......)))..)))))((((((((.((.((((.......))))...)))))))))) ( -15.60)
>DroEre_CAF1 87792 96 + 1
GUCAAAAGACCAAAAAAG-AAAAAAGGGGAAAAAUAUAUGUAUAAAAACAUAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAAAUGUCGGGCAU
(((....)))........-............((((((((((......))))))))))((((((((.((.((((.......))))...)))))))))) ( -20.50)
>DroYak_CAF1 91685 91 + 1
GUCAACAGACCAAAA------AAAAGGGGAAAAAUAGAUGUAUAAAAAUAUAUAUUUAUGCCUGGGCAGUUUAGAAUGUAUGAGAGAUCUCGGGUAU
(((....))).....------............(((((((((((....)))))))))))(((((((...((((.......))))....))))))).. ( -17.10)
>consensus
GUCAACGGACCAAAAA___AAAAAAGGGAAAAAAUAGAUGUAUAAAAACAUAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU
(((....))).....................(((((.((((......)))).)))))((((((((....((((.......)))).....)))))))) (-12.22 = -12.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:32 2006