| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,232,516 – 18,232,608 |
| Length | 92 |
| Max. P | 0.626864 |
| Location | 18,232,516 – 18,232,608 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 84.78 |
| Mean single sequence MFE | -19.38 |
| Consensus MFE | -15.66 |
| Energy contribution | -15.97 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18232516 92 - 22407834 GUCCUGUAUUCUUCAAUAGUACUU-ACUUUUAACAGUUUUCUCUCACUGUACACCUUCUGGAGCCAGGAGCUCUUGGUCUUUUUCCUGGCUGC ((.((((........)))).))..-.......(((((........)))))...((....))(((((((((............))))))))).. ( -20.00) >DroSec_CAF1 75672 89 - 1 ----UGUAACCUUCAACAAUACUUCACUUUUAACAGUUUUCUCUCACUGUACACCUUCUGGAGCCAGGAGCUCUUGGUCUUUUUCCUGGCUGC ----............................(((((........)))))...((....))(((((((((............))))))))).. ( -18.30) >DroEre_CAF1 75713 89 - 1 GGCCUGUAUUAUUGACCAA--CU--UCUUUGAGCAUAUUUCUCUCACUGUACACCUUCUAGAGCCAGGAGCUCUUGGUCUUUUUCCUGGCUGC ((((.........((((((--..--....((((.........))))..............((((.....))))))))))........)))).. ( -18.83) >DroYak_CAF1 80100 89 - 1 GGCCCGUAUUAUUGAAGAA--CC--UCUUUCAACAGUUUUCUCUCACUGUACACCUUCUGGAGCCAGGAGCUCUUGGUCUUUUUCCUGGCUGU ...((.......(((((..--..--..)))))(((((........))))).........))(((((((((............))))))))).. ( -20.40) >consensus GGCCUGUAUUAUUCAACAA__CU__ACUUUUAACAGUUUUCUCUCACUGUACACCUUCUGGAGCCAGGAGCUCUUGGUCUUUUUCCUGGCUGC ................................(((((........)))))...........(((((((((............))))))))).. (-15.66 = -15.97 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:26 2006