Locus 6468

Sequence ID 2L_DroMel_CAF1
Location 18,169,610 – 18,169,714
Length 104
Max. P 0.678877
window10326

overview

Window 6

Location 18,169,610 – 18,169,714
Length 104
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 83.44
Mean single sequence MFE -24.62
Consensus MFE -14.54
Energy contribution -14.66
Covariance contribution 0.12
Combinations/Pair 1.22
Mean z-score -2.17
Structure conservation index 0.59
SVM decision value 0.30
SVM RNA-class probability 0.678877
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18169610 104 + 22407834
AA-------CUAAGUGUUUAAGCA-GUCAUUAAAAGAUUGUUGAAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCACUUGUAGAAUGAACGA
..-------.(((((((((.....-.((((((((((((((((..(((.((((.....))))..)))..))))))))..)))))))).....)))))))))............ ( -22.50)
>DroSec_CAF1 12142 104 + 1
AA-------CUAAGUGUUUAAGCU-UUCAUUAAAAGGUUGGAGCAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCGCUUGUAGAAUGAACGA
..-------.(((((((((.....-(((((((((((((((((((.........)))))).)))..((((....))))))))))))))....)))))))))............ ( -28.30)
>DroSim_CAF1 12164 104 + 1
AA-------CUAAGUGUUUAAGCU-UUCAUUAAAAGGUUGGAGCAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCGCUUGUAGAAUGAACGA
..-------.(((((((((.....-(((((((((((((((((((.........)))))).)))..((((....))))))))))))))....)))))))))............ ( -28.30)
>DroEre_CAF1 12362 104 + 1
AA--------CAAAAGCUUAAGCUUUUCAUUAAAAUAUUGGUGCGAUUUAUGAGUUCCGUGCCAUUAGAGCAAUAUGUUUUAAUGAAUUUAAAGCACUUGCAGAAUAAACGA
..--------.....((....(((((((((((((((((...(((.....(((.((.....)))))....)))..))))))))))))....)))))....))........... ( -22.60)
>DroYak_CAF1 12396 111 + 1
AAUGUGUAAGCACUUGCUUAAGCUUUUCAUUAAAAAAUUUAUACGAUCUAUGAGUUUCUCGAUAUUAGAGCAAUCUGUUUUAAAGAAUUUAAAGCAC-UGCAGAAUAAGCGA
...(((....)))(((((((.(((((..((..(.(((((((((.....))))))))).)..))...)))))....((((((((.....)))))))).-.......))))))) ( -21.40)
>consensus
AA_______CUAAGUGUUUAAGCU_UUCAUUAAAAGAUUGGUGCAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCACUUGUAGAAUGAACGA
..........(((((((((.......((((....(((((.....))))))))).........(((((((((.....)))))))))......)))))))))............ (-14.54 = -14.66 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:56 2006