Locus 6467

Sequence ID 2L_DroMel_CAF1
Location 18,168,192 – 18,168,291
Length 99
Max. P 0.551901
window10325

overview

Window 5

Location 18,168,192 – 18,168,291
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 90.37
Mean single sequence MFE -32.12
Consensus MFE -29.77
Energy contribution -29.44
Covariance contribution -0.33
Combinations/Pair 1.23
Mean z-score -1.08
Structure conservation index 0.93
SVM decision value 0.04
SVM RNA-class probability 0.551901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18168192 99 + 22407834
CGCUUCUGACUGUGCUAUUGCCAUCUUUGUCUGUCGACAGGUGUGCACAAUUUCCAGUUGAAUCUCAGUUAGCUUCGGAAUUGCCGGAUUGGGCUGGGA
...(((.(((((.(..((((.(((.((((((....)))))).)))..))))..)))))))))((((((((...(((((.....)))))...)))))))) ( -29.40)
>DroSec_CAF1 10705 99 + 1
CGCUGCUGACUGUGCUAUUGCCAUCUUUGUCUGUCGACAGGUGUGCACAAUUUCCAGUUGAAUCUCAGCCAGCUUCAGAAUUGCCGGAUUGGGCUGGGA
.((((..((.(((((...((((.....((((....)))))))).))))).))..))))....((((((((...(((.(.....).)))...)))))))) ( -29.70)
>DroSim_CAF1 10745 99 + 1
GGCUGCUGACUGUGCUAUUGCCAUCUUUGUCUGUCGACAGGUGUGCACAAUUUCCAGUUGAAUCUCAGCCAGCUUCAGAAUUGCCGGAUUGGGCUGGGA
(((((..((.(((((...((((.....((((....)))))))).))))).))..)))))...((((((((...(((.(.....).)))...)))))))) ( -30.50)
>DroEre_CAF1 10919 99 + 1
CGCUGCUCACUGUGCUAUUGCCAUCUUCGUCAGUCGACAGGUGUGCACAAUUUCCAGUUGAAUCUCAGCCAGCUCCGGAAUUGCCGGAUUGGGCUGGGA
.((((.....(((((......((((((((.....))).))))).))))).....))))....((((((((...(((((.....)))))...)))))))) ( -36.30)
>DroYak_CAF1 10935 99 + 1
CGCUUCUAACUGUGCCAUUGCCAUCUUUGUCUGUCGACAGGUGUGCACAAUUUCCAGUUGAAUCUCAGCCAGCUUCGGAAUGGCCGGAUUGGGCUGGGA
...(((.(((((......((((((((..(((....)))))))).))).......))))))))((((((((...(((((.....)))))...)))))))) ( -33.62)
>DroAna_CAF1 9551 99 + 1
UGCCCGCAACUGUAGAGCUGCCAUUUUUGUCUGCCGACAGGUGUGCACAAUUUCCAGUUGAAUCUCGGCCAGCUUUGGAAUUACCCGAUUGGGCUGGGA
......((((((.(((..((((((..(((((....)))))))).)))...))).))))))..((((((((....((((......))))...)))))))) ( -33.20)
>consensus
CGCUGCUGACUGUGCUAUUGCCAUCUUUGUCUGUCGACAGGUGUGCACAAUUUCCAGUUGAAUCUCAGCCAGCUUCGGAAUUGCCGGAUUGGGCUGGGA
......((((((......((((((((..(((....)))))))).))).......))))))..((((((((...(((((.....)))))...)))))))) (-29.77 = -29.44 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:54 2006