Locus 6465

Sequence ID 2L_DroMel_CAF1
Location 18,166,261 – 18,166,355
Length 94
Max. P 0.538472
window10323

overview

Window 3

Location 18,166,261 – 18,166,355
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -16.78
Consensus MFE -11.46
Energy contribution -11.68
Covariance contribution 0.22
Combinations/Pair 1.13
Mean z-score -1.09
Structure conservation index 0.68
SVM decision value 0.01
SVM RNA-class probability 0.538472
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18166261 94 + 22407834
UCUGACCUUCUGCGAACGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU-----CCUCGCGCAAAAAUGAAAAAAAAAAAAUAACUAAAAACACU
(((((....((((..((..((((........))))...)).)))).)))))..-----......................................... ( -13.30)
>DroSec_CAF1 8809 89 + 1
UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU-----CCUCGCGCAGAAAUAAAAAAAGAAUG-----GGAAAACACU
.......(((((((.(.((((.((((...........)))).)))).).((..-----..)).)))))))..............-----.......... ( -18.90)
>DroSim_CAF1 8830 89 + 1
UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU-----CCUCGCGCAGAAAUAAAAAAAGAAUG-----GAAAAACACU
.......(((((((.(.((((.((((...........)))).)))).).((..-----..)).)))))))..............-----.......... ( -18.90)
>DroEre_CAF1 8952 88 + 1
CCUGACCUUCUGCCAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGUUCAGACUUUUCGCUUCGCGCAGAAAUAAAAAACCA----------A-AACACU
.((((....((((((.(..((((........))))...))))))).))))...((((((.....)).))))..........----------.-...... ( -18.50)
>DroYak_CAF1 9069 84 + 1
UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGUUCAGACU-----CUUCGCACAGAAGUAAAAAACCA----------AAAACAGU
(((((....((((..((..((((........))))...)).)))).)))))..-----((((.....))))..........----------........ ( -17.00)
>DroAna_CAF1 7627 71 + 1
UCUGACCUUCUGCGAG--CUGACAUUUAACAGUCAAGAGUGGCAGCGCAGACA-----UUUCCCAAA-----AAAAAA----------------AGCUU
........(((((..(--(((.(((((.........))))).)))))))))..-----.........-----......----------------..... ( -14.10)
>consensus
UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU_____CCUCGCGCAGAAAUAAAAAAACA__________AAAACACU
(((((....((((..((..((((........))))...)).)))).)))))................................................ (-11.46 = -11.68 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:52 2006