Locus 6459

Sequence ID 2L_DroMel_CAF1
Location 18,146,519 – 18,146,609
Length 90
Max. P 0.527713
window10315

overview

Window 5

Location 18,146,519 – 18,146,609
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 76.77
Mean single sequence MFE -26.44
Consensus MFE -12.97
Energy contribution -13.67
Covariance contribution 0.70
Combinations/Pair 1.07
Mean z-score -1.81
Structure conservation index 0.49
SVM decision value -0.01
SVM RNA-class probability 0.527713
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18146519 90 + 22407834
UUGUUGUUGUACGGCUUCGGACGAAUUCAGCCGCUACACCUUUACAUUCAUACACCUUUAGCAAGAAGCCA---UGGCCAACAACAGGGCCCA
(((((((((..(((((((((..(....)..))((((......................))))..)))))).---.)..)))))))))...... ( -23.75)
>DroPse_CAF1 12137 87 + 1
UUGUUGUUGUACGGCUUCAGCCGAAUUGAGCGGCACGGCGGAUAGGC---UACACCUUUAGCAAGAAGCCAGAAAGGCCGAAAGA---GCCAG
............((((((.((((.......))))...((....(((.---....)))...))..)))))).....((((....).---))).. ( -29.90)
>DroSim_CAF1 10476 90 + 1
UUGUUGUUGUACGGCUUCGGCCGAAUUCAGCCGCUACACCUUUACAUUCAUACACCUUUAGCAAGAAGCCA---UGGCCAACAGCGGGGCCCA
(((((((((..((((((((((.(....).)))((((......................))))..)))))).---.)..)))))))))...... ( -26.45)
>DroEre_CAF1 10520 89 + 1
UUGUUGUUGUACGGCUUCGGCCGAAUUCAGCCGCUACACCUUUACACUCAUACGCCUUUAGCAAGAAGCCA---UGGCCAACAACAG-GCCCA
(((((((((..((((((((((.(....).)))((((......................))))..)))))).---.)..)))))))))-..... ( -27.25)
>DroAna_CAF1 9993 71 + 1
UUGUUGUUGUACGGCUUCGGCCGAAUUGAGCGGCUACAC----------------CUUUAGCAAGAAGCCA---CGGCCAACAGA---GCUCC
((((((((((.((((....))))........((((.(..----------------.........).)))))---))).)))))).---..... ( -21.40)
>DroPer_CAF1 13342 87 + 1
UUGUUGUUGUACGGCUUCAGCCGAAUUGAGCGGCACGGCGGAUAGGC---UACACCUUUAGCAAGAAGCCAGAAAGGCCGAAAGA---GCCAG
............((((((.((((.......))))...((....(((.---....)))...))..)))))).....((((....).---))).. ( -29.90)
>consensus
UUGUUGUUGUACGGCUUCGGCCGAAUUCAGCCGCUACACCUUUACAC___UACACCUUUAGCAAGAAGCCA___UGGCCAACAGA___GCCCA
............((((((.((........)).((((......................))))..)))))).....(((..........))).. (-12.97 = -13.67 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:44 2006