Locus 6455

Sequence ID 2L_DroMel_CAF1
Location 18,138,069 – 18,138,166
Length 97
Max. P 0.810218
window10310

overview

Window 0

Location 18,138,069 – 18,138,166
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.93
Mean single sequence MFE -35.58
Consensus MFE -24.37
Energy contribution -25.57
Covariance contribution 1.20
Combinations/Pair 1.31
Mean z-score -1.71
Structure conservation index 0.68
SVM decision value 0.65
SVM RNA-class probability 0.810218
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18138069 97 + 22407834
CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAGGGCGGCGGCGUCGUCGUCGGUGGCACCAUCUGC-GCAUUGCCGCUGCUGCUCC
...........(((((..((((((.....))))))..)))))..(((((((((((.((.(((.((((....)))).))-)...)).))))))))))). ( -40.70)
>DroVir_CAF1 1920 92 + 1
--CACUUAAAAUUUGCUCAUUUGCAUUGAGCGCGUCCGCAGACAUCGCGACGCCC--UCGGACAGUGGAAAUUGUUGCU--GCUCCUGCUGCUGCUGC
--............((......(((..(((.(((((.((.......))))))).)--))((((((..(......)..))--).))))))....))... ( -25.90)
>DroSec_CAF1 2273 97 + 1
CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAAGGCGGCGGCGUCGUCGUCGGUGGCACCACCUGC-GCAUUGCCGCUGCUGCUCC
...........(((((..((((((.....))))))..)))))...((((((((((..(.(((.((((....)))).))-))..))))))))))..... ( -42.50)
>DroSim_CAF1 2281 97 + 1
CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAGGGCGGCGGCGUCGUCGUCGGUGGCACCACCUGC-GCAUUGCCGCUGCUGCUCC
...........(((((..((((((.....))))))..)))))..(((((((((((.((.(((.((((....)))).))-)...)).))))))))))). ( -43.30)
>DroEre_CAF1 2226 91 + 1
CACGUUCACAAUCUGCCCGUUCGCAUUCAGCGAGUCCGCAGACAGGGAGGCGU------UGUUGGUGGCACCACCUUC-GCAGUGCCGCUGCUGCUCC
...........(((((...(((((.....)))))...)))))(((((.(((((------(((.((((....))))...-)))))))).)).))).... ( -31.50)
>DroYak_CAF1 2287 91 + 1
CACAUUCACAAUCUGGCCAUUUGCAUUCAGCGAGUCCGCAGACAGGGAGGCGG------CGUCGAUGGCACCACCUUC-GCAGUGGCGCUGCUGCUCC
...........((((...((((((.....))))))...))))..(((.(((((------(((((...((.........-))..)))))))))).))). ( -29.60)
>consensus
CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAGGGCGGCGGCG__GUCGUCGGUGGCACCACCUGC_GCAUUGCCGCUGCUGCUCC
...........(((((..((((((.....))))))..)))))..(((((((((((....))))(((((((.............)))))))))))))). (-24.37 = -25.57 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:40 2006