Locus 6453

Sequence ID 2L_DroMel_CAF1
Location 18,133,124 – 18,133,219
Length 95
Max. P 0.990019
window10308

overview

Window 8

Location 18,133,124 – 18,133,219
Length 95
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 71.32
Mean single sequence MFE -13.38
Consensus MFE -8.33
Energy contribution -7.89
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -1.89
Structure conservation index 0.62
SVM decision value 2.19
SVM RNA-class probability 0.990019
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18133124 95 + 22407834
GCUAUAAAA-UCACAUAGAUCUAAUUCUGCAUAUCAUUAAAAGUCCUAUGUGGGUGCUGUGUGUUCUAUUCUCCAGGGCAGGUACAAAAUAACCAA
.........-((((((((..((...................))..))))))))(((((...((((((.......)))))))))))........... ( -16.61)
>DroSec_CAF1 23165 73 + 1
GUUAUAAAAGUACCAUAAAUCUAUUUCUGCAUAACAUUAAAAAUCAUAUGUAGAGGC-----------------------GGUAUAAAAUAACCAA
(((((....((((((((....)))(((((((((.............)))))))))..-----------------------)))))...)))))... ( -12.12)
>DroSim_CAF1 23956 73 + 1
GUUAUAAAA-CACCAUAACUCUAUUUCUGCAUAACAUUAAAAAUCAUAUGUAGAUGC----------------------AGGUAUAAAAUAACCAA
(((((....-....)))))..(((.(((((((.((((..........))))..))))----------------------))).))).......... ( -11.40)
>consensus
GUUAUAAAA_UACCAUAAAUCUAUUUCUGCAUAACAUUAAAAAUCAUAUGUAGAUGC______________________AGGUAUAAAAUAACCAA
.........................((((((((.............))))))))..........................(((........))).. ( -8.33 =  -7.89 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:37 2006