Locus 6448

Sequence ID 2L_DroMel_CAF1
Location 18,122,665 – 18,122,775
Length 110
Max. P 0.654574
window10301

overview

Window 1

Location 18,122,665 – 18,122,775
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.24
Mean single sequence MFE -29.08
Consensus MFE -25.32
Energy contribution -24.30
Covariance contribution -1.02
Combinations/Pair 1.33
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.25
SVM RNA-class probability 0.654574
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18122665 110 + 22407834
ACAAGCUGCGUAUCAAUGAGAACCUGAUGGCCAUUGCAAUUGAUGGUUAUUUGGGCGAUAGGAAGUCGCCCUACUCCAAGCGCAAUAUCCAGGAAACGAACAAGUGAGU----------A
((..(((((((......(((.....((((((((((......)))))))))).(((((((.....)))))))..)))...))))........(....).....)))..))----------. ( -32.10)
>DroVir_CAF1 14512 110 + 1
ACAAGCUGCGUAUCAAUGAGCAAUUGAUGGCCAUUGGAAUUGAUGGUUAUUUGGGUGAUAGGAAAUCGCCCUACUCCAAGCGUAACAUACAGGAAACGAACAAGUGAGU----------G
....(((.(((....))))))....((((((((((......)))))))))).(((((((.....)))))))((((((....(((...))).(....)......).))))----------) ( -28.20)
>DroGri_CAF1 13200 110 + 1
ACAAGCUACGUAUCAAUGAGCAUUUGAUGGCCAUUGGAAUUGAUGGAUAUUUGGGUGAUAGAAAAUCGCCCUACUCCAAGCGUAACAUACAGGAAAUGAGCAAGUGAGU----------A
....(((((((.((((((.((........))))))))......((((.....(((((((.....)))))))...)))).))))..(((.......))))))........----------. ( -27.20)
>DroWil_CAF1 37119 110 + 1
AUAAGCUACGUAUCAAUGAGAAUUUGAUGGCCAUUGCAAUUGAUGGUUAUUUGGGUGAUAGAAAAUCGCCAUAUUCGAAGCGUAACAUCCAGGAAACGAAUAAGUGAGU----------A
....(.(((((.((...........((((((((((......))))))))))..((((((.....))))))......)).))))).).....(....)............----------. ( -25.60)
>DroMoj_CAF1 16811 110 + 1
ACAAGCUGCGUAUCAAUGAGCAAUUGAUGGUCAUUGGAAUUGAUGGCUAUUUGGGUGAUAGAAAAUCGCCCUAUUCGAAGCGCAACAUACAGGAAACGAAUAAGUGAGU----------A
((..(((((((.((...........((((((((((......)))))))))).(((((((.....))))))).....)).))))........(....).....)))..))----------. ( -30.90)
>DroAna_CAF1 10993 120 + 1
AUAAGCUACGUAUCAAUGAGAACCUGAUGGCCAUUGCAAUCGAUGGUUAUUUGGGCGAUAGGAAGUCGCCCUACUCCAAGCGGAACAUACAGGAAACGAACAAGUGAGUACUAAGGACUA
.........(((((........((((((((((((((....))))))))))..(((((((.....)))))))...(((....))).....))))..((......)))).)))......... ( -30.50)
>consensus
ACAAGCUACGUAUCAAUGAGAAAUUGAUGGCCAUUGCAAUUGAUGGUUAUUUGGGUGAUAGAAAAUCGCCCUACUCCAAGCGUAACAUACAGGAAACGAACAAGUGAGU__________A
....(.(((((......(((.....((((((((((......)))))))))).(((((((.....)))))))..)))...))))).).....(....)....................... (-25.32 = -24.30 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:31 2006