Locus 6443

Sequence ID 2L_DroMel_CAF1
Location 18,104,557 – 18,104,647
Length 90
Max. P 0.808663
window10291

overview

Window 1

Location 18,104,557 – 18,104,647
Length 90
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.74
Mean single sequence MFE -15.60
Consensus MFE -11.07
Energy contribution -11.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.71
SVM decision value 0.64
SVM RNA-class probability 0.808663
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18104557 90 + 22407834
---------------------AGCUGCUCCGAAAUCGUGGCACACAUUCAGCAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUGAAGUGGUUGACUAAAUAUUGAAAU
---------------------.(.(((..((....))..))))..............((((((....(((((.((((((..........)))))).))))).))))))... ( -17.90)
>DroVir_CAF1 30796 93 + 1
UA------CUA------------CAACAACAAAAUGACAACAAGUAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUCGACUAAAUAUUGAAAU
..------...------------..................................((((((....(((((..(((((..........)))))..))))).))))))... ( -11.40)
>DroPse_CAF1 30805 108 + 1
UGGCAGAGCACAGACAAU---GGCAACACCAGAAUGAUAACAAACAUUUAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUUGACUAAAUAUUGAAAU
(((....((.((.....)---)))....)))(((((........)))))........((((((....(((((.((((((..........)))))).))))).))))))... ( -16.90)
>DroGri_CAF1 25159 101 + 1
G-------GCGAUACAAUAAU---AACAACAGAAUGACAACAAGUAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUCGACUAAAUAUUGAAAU
.-------......(((((..---.......(((((........)))))..................(((((..(((((..........)))))..))))).))))).... ( -15.50)
>DroAna_CAF1 23588 88 + 1
---------------------AG--GCGCCAAAAUAAUAGCAAACAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUGAAGUGGUUGACUAAAUAUUGAAAU
---------------------..--((............))................((((((....(((((.((((((..........)))))).))))).))))))... ( -12.20)
>DroPer_CAF1 31037 108 + 1
UGGCAGUGCACAGACAAU---GGCAACACCAGAAUGAUAACAAACAUUUAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUUGACUAAAUAUUGAAAU
(((...(((.((.....)---))))...)))(((((........)))))........((((((....(((((.((((((..........)))))).))))).))))))... ( -19.70)
>consensus
U_______C_____________GCAACACCAAAAUGAUAACAAACAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUUGACUAAAUAUUGAAAU
.........................................................((((((....(((((.((((((..........)))))).))))).))))))... (-11.07 = -11.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:21 2006