Locus 644

Sequence ID 2L_DroMel_CAF1
Location 1,944,085 – 1,944,202
Length 117
Max. P 0.875684
window1051

overview

Window 1

Location 1,944,085 – 1,944,202
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.61
Mean single sequence MFE -25.15
Consensus MFE -13.80
Energy contribution -14.25
Covariance contribution 0.45
Combinations/Pair 1.16
Mean z-score -1.79
Structure conservation index 0.55
SVM decision value 0.89
SVM RNA-class probability 0.875684
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1944085 117 + 22407834
GAAAUCUAAACCCU-CAGAGAUCCUGCACAUAUGCAAACGUCAUAUGACACCAGGAUAGAAUGACACCAGAACUCACAAACUUUAUAUAU--AUAUGUAUGGGAUGGACUUCAUUCAGAA
....(((.......-.....((((((..(((((((....).))))))....)))))).((((((..(((...((((.......(((((..--..))))))))).)))...))))))))). ( -23.51)
>DroPse_CAF1 141484 107 + 1
GGAGCCUUAACCCUGGAGAGA-CCUGGCCAUAUGCAGCCGGCAUAUGGCUACUGGAUCGA------CACG------UAGCGUGUGUAUAUAUCUUAGCAUAGGAUGGGUAGCGGCCAACA
.(.(((...((((......((-(((((((((((((.....)))))))))))..)).)).(------((((------...)))))......((((((...))))))))))...)))).... ( -35.10)
>DroSec_CAF1 108780 107 + 1
GAAAUCUAAACCCU-CAGAGAUCCUGCACAUAUGCAAACGUCAUAUGACACCAGGAUUGC------CAAGAACUCACAAACUAUAUAUAU------AUAUGGGAUGCACUUCAUUCAGAA
(((...........-....(((((((..(((((((....).))))))....)))))))..------...(((....((..((((((....------))))))..))...))).))).... ( -19.30)
>DroSim_CAF1 92718 107 + 1
GAAAUCUAAACCCU-CAGAGAUCCUGCACAUAUGCAAACGUCAUAUGAUACCAGGAUUGC------CAAGAACUCACAAACUAUAUAUAU------AUAUGGGAUGGACUUCAUUCAGAA
(((...........-....(((((((..(((((((....).))))))....)))))))..------...(((.((.((..((((((....------))))))..)))).))).))).... ( -22.90)
>DroEre_CAF1 110949 107 + 1
GACAUCUAAUCCCU-CAAAGAUCCUGCACAUAUGCAAACGUCAUAUGGCAGCAGGAUUGC------CGAUAGCUUACUCACUAGAUUUAU------AGAUGGGAUGGGCAUCAUUCAGAA
....(((.......-....((((((((.(((((((....).))))))...))))))))..------.(((.((((((((((((......)------)).)))).))))))))....))). ( -31.20)
>DroYak_CAF1 119360 104 + 1
GAAAUAUAAUCCCC-GAGAGAUC-UGCCCAUAUGCAAAAGUCAUAUGGCACCAGGAUUGC------CUACAACUCACUAACUAUAU--AU------AUAUUGGAUGGGCAUCAUUCAAAA
......((((((.(-....)...-((((.((((((....).)))))))))...)))))).------....................--..------...(((((((.....))))))).. ( -18.90)
>consensus
GAAAUCUAAACCCU_CAGAGAUCCUGCACAUAUGCAAACGUCAUAUGACACCAGGAUUGC______CAAGAACUCACAAACUAUAUAUAU______AUAUGGGAUGGACAUCAUUCAGAA
...................(((((((..(((((((....).))))))....)))))))...........................................(((((.....))))).... (-13.80 = -14.25 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:45 2006