Locus 6432

Sequence ID 2L_DroMel_CAF1
Location 18,082,093 – 18,082,213
Length 120
Max. P 0.884850
window10266

overview

Window 6

Location 18,082,093 – 18,082,213
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -32.05
Consensus MFE -29.36
Energy contribution -28.67
Covariance contribution -0.69
Combinations/Pair 1.14
Mean z-score -1.78
Structure conservation index 0.92
SVM decision value 0.93
SVM RNA-class probability 0.884850
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18082093 120 + 22407834
UUUAGGCUAACAAAGCCAUAAUCUCGCUAAUCAAUGGGAAUAUUUGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC
.((((((........(((...(((((........))))).....)))(((((.((((.((((((.....))..(((((......))))))))).)))).))))).........)))))). ( -31.10)
>DroSec_CAF1 289438 120 + 1
UUCAGGCUAACAAAGCCAUAAUCUCGCUAAUCACUGGGAAUAUUCGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC
....((((.....))))........(((((.(((...((....))..(((((.((((.((((((.....))..(((((......))))))))).)))).))))).......))).))))) ( -34.10)
>DroSim_CAF1 291428 120 + 1
UUAAGGCUAACAAAGCCAUAAUCUCGCUAAUCACUGGGAAUAUUCGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC
....((((.....))))........(((((.(((...((....))..(((((.((((.((((((.....))..(((((......))))))))).)))).))))).......))).))))) ( -34.10)
>DroYak_CAF1 306847 120 + 1
UUAAGGCUAACCAAGCAAUAAAUUCGCUAAUCACUACGAAAAUGUUGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUAAAGGCCUGGUCAUAAAAAAUGCAAAUUACGUGCUUGGC
..........((((((......((((..........)))).((((..(((((.((((.(((((...........((((......))))))))).)))).))))).....)))))))))). ( -28.90)
>consensus
UUAAGGCUAACAAAGCCAUAAUCUCGCUAAUCACUGGGAAUAUUCGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC
....((((.....))))........(((((.(((.(((....)))..(((((.((((.((((((.....))..(((((......))))))))).)))).))))).......))).))))) (-29.36 = -28.67 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:57 2006