Locus 643

Sequence ID 2L_DroMel_CAF1
Location 1,942,617 – 1,942,733
Length 116
Max. P 0.507697
window1050

overview

Window 0

Location 1,942,617 – 1,942,733
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.12
Mean single sequence MFE -29.44
Consensus MFE -21.90
Energy contribution -22.86
Covariance contribution 0.96
Combinations/Pair 1.11
Mean z-score -1.61
Structure conservation index 0.74
SVM decision value -0.05
SVM RNA-class probability 0.507697
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1942617 116 + 22407834
ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUAUGAAUCUACAGCAUUCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA
....((((........))))......(((((((.......(((((.....)))))........((((((.(.(((((..(((.......)))))))).).))))))..))))))). ( -28.80)
>DroSec_CAF1 107323 116 + 1
ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUUAUAGUUUAGUGUGAAUCUACAGCCUGCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA
....((((........))))......(((((((((((.(((....))).(..(.((((((((..((((.............))))....)))))))).)..)))))..))))))). ( -27.62)
>DroSim_CAF1 91249 116 + 1
ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUGUGAAUCUACAGCCUGCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA
....((((........))))......(((((((.......(((((.....)))))........((((((.(.(((((.((........))..))))).).))))))..))))))). ( -27.80)
>DroEre_CAF1 109487 116 + 1
ACGCCCUCAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUAUGAGUCUACGGUUUUCAAAUAAAGAACUGUAUGCUCAUGCAAUGCUCCUG
................(((((...(((...)))((((...(((((.....)))))........((((((((.(((((((((.......))))))))).)))))))).))))))))) ( -33.80)
>DroYak_CAF1 117893 116 + 1
ACGCCCUCAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCCCCAAUCGGUAGGAUUGAUAGUUUAGUAUGAAUCUACAGUUGUGAACAAAAGAACUGUAUGCUCAUGCGAUGCUACGG
.((......(((.((((.(((...((((....)))))))((....))..)))))))((((...((((((.(.(((((((.(.......).))))))).).))))))...)))))). ( -29.20)
>consensus
ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUAUGAAUCUACAGCCUUCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA
....((((........))))......(((((((.......(((((.....)))))........((((((.(.(((((...............))))).).))))))..))))))). (-21.90 = -22.86 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:44 2006