| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,067,914 – 18,068,021 |
| Length | 107 |
| Max. P | 0.926772 |
| Location | 18,067,914 – 18,068,021 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 74.82 |
| Mean single sequence MFE | -33.42 |
| Consensus MFE | -8.89 |
| Energy contribution | -10.78 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.27 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.926772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18067914 107 - 22407834 AAACCAAUAAAGCGAAAGGCUGGAGAAAAGGAGCCGGUUGAGACA-GAGGCGCAGGAUCCAAGGAU-CCAAAGG------UUCCUCUCCUCCUUUGCUGCACUGCACCAAAGUUG ..........(((.(((((..(((((...((((((.(((......-..)))...(((((....)))-))...))------))))))))).))))))))................. ( -34.20) >DroSec_CAF1 275118 106 - 1 AAACCAAUAAAGCGAAAGGCAGGCGAAAAGGAGCCGGUUGAGACA-GAGGCGUAGGAUCCAAGGAU-CCAAAGG------UUCCGCUCCUCCU-UGCUGCACUGCACCAAAGUUG ....((((....(....)(((((((..((((((......(((.(.-(((.(...(((((....)))-))...).------))).)))))))))-)..))).))))......)))) ( -33.40) >DroEre_CAF1 267932 106 - 1 AAACCAAUAAAGAGAAGGGCAGGUGAAGAGGAGCAGGCUGAGACA-GAGGCGCAGGAUCCAAGGAU-CCGAAGG------UUGCUCCUCUCCU-UGCUGCACUGCACCAAAGUUG ................(((((((.((.((((((((((((......-..)))...(((((....)))-)).....------)))))))))))))-)))(((...)))))....... ( -37.00) >DroWil_CAF1 348886 96 - 1 AUAUGUACAUACAUAUAUGUAGGUAUA--------GGAUAAAACAAGAAGAGC----UCC-----UGCAGAUGGUGCUGCUGCAUCUACUCC--UGCUGCACUGCAGCAUACUUG ((((.((((((....)))))).)))).--------........((((....((----...-----.)).....(((((((((((.(......--.).))))..))))))).)))) ( -25.60) >DroYak_CAF1 284628 106 - 1 AAACCAAUAAAGCGAAAGGCAGGUGUACAGGAGCCGGCUGAGACA-GAGGCGCAGGAUCCAAGGAU-CCAAGGG------UUCCUCUUCUCCU-UGCUGCACUGCACCAAAGUUG ....((((...((.....)).((((((..(.(((.((..((((.(-((((.((.(((((....)))-))....)------).)))))))))))-.))).)..))))))...)))) ( -36.90) >consensus AAACCAAUAAAGCGAAAGGCAGGUGAAAAGGAGCCGGCUGAGACA_GAGGCGCAGGAUCCAAGGAU_CCAAAGG______UUCCUCUCCUCCU_UGCUGCACUGCACCAAAGUUG ..................(((((((...(((((...(((.........)))...(((((....))).))...................)))))....))).)))).......... ( -8.89 = -10.78 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:40 2006