Locus 6421

Sequence ID 2L_DroMel_CAF1
Location 18,058,646 – 18,058,749
Length 103
Max. P 0.756515
window10247

overview

Window 7

Location 18,058,646 – 18,058,749
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.60
Mean single sequence MFE -29.50
Consensus MFE -19.33
Energy contribution -20.81
Covariance contribution 1.47
Combinations/Pair 1.13
Mean z-score -2.04
Structure conservation index 0.66
SVM decision value 0.49
SVM RNA-class probability 0.756515
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18058646 103 + 22407834
AGCGGGUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCAAAACGUUAAAU
((((.(((....))).((((((((..((((((...(((((((....((((...)))).))))...)))......)))).))..))))))))....)))).... ( -34.30)
>DroSec_CAF1 265734 103 + 1
AGCGGCUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCGUUAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCAAAACGUUAAAU
((((((((......))))((((((..((((((...((((((((...((((...)))))))))...)))......)))).))..))))))......)))).... ( -34.70)
>DroSim_CAF1 266019 103 + 1
AGCGGGUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCCUAAAAUGCGAAACUCUUACGAACAGGCUAAUAAAGGAGCGGACGCGUCGCAGAACUUUAAAU
.....(((....))).((((((((..((((((..(((((.........................))))).....)))).))..))))))))............ ( -26.91)
>DroEre_CAF1 258894 88 + 1
AG---------------CGAUGCGGUUGUCCUGCUGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUUGCCAAAUGUUAAAU
.(---------------(((((((..((((((..((((((((....((((...)))).))))...)))).....)))).))..))))))))............ ( -28.40)
>DroYak_CAF1 275248 103 + 1
AGCGGGUGGAAUAACAGCGAUGCGGUUGUCCUGCAGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCACGACGUUAAAU
((((.((......)).((((((((..((((((...(((((((....((((...)))).))))...)))......)))).))..))))))))....)))).... ( -32.60)
>DroAna_CAF1 251791 89 + 1
CGAG-------ACGAAGCCAUCCAUUUGUCCUGCAGCCUCGUAA-ACCUGAAAUGCAAAC------GCAAAUAAAGCAGCGGACGCGUUGCAAAACGUUAAAU
...(-------(((.........((((((..((((...(((...-...)))..))))...------))))))...((((((....))))))....)))).... ( -20.10)
>consensus
AGCGGGUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCAAAACGUUAAAU
................((((((((.(((((((...((((.......((((...)))).......))))......)))).))).))))))))............ (-19.33 = -20.81 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:36 2006