Locus 6418

Sequence ID 2L_DroMel_CAF1
Location 18,038,395 – 18,038,505
Length 110
Max. P 0.926963
window10243

overview

Window 3

Location 18,038,395 – 18,038,505
Length 110
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 69.71
Mean single sequence MFE -31.93
Consensus MFE -11.53
Energy contribution -12.62
Covariance contribution 1.09
Combinations/Pair 1.32
Mean z-score -2.18
Structure conservation index 0.36
SVM decision value 1.18
SVM RNA-class probability 0.926963
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18038395 110 - 22407834
AAAUGGUAAAUGGUAAAUGGCGAAUGGCGAAUGGCGAAUGGUAAAU-GGCA----GCGGAUGGCAGCGCGUUGCUCAUACGCCAUGUG-GUGCCUGC-GGUGUGCCAAUAAUGCUGG
....((((..(((((.((.(((...((((.((((((.(((((((.(-(((.----((.....)).)).)))))).))).))))))...-.)))))))-.)).)))))....)))).. ( -36.40)
>DroSec_CAF1 254668 86 - 1
AAAUGGUA---------------------AAUGGCGAAUGGUAAAU-GG-------CGGAUGGCAGCGCGUUGCUCAUACGCCAUGUG-GUGCCUGC-GGUGUGCCAAUAAUGCUGG
...(((((---------------------.((.(((...((((.((-((-------((.(((((((....)))).))).))))))...-.)))))))-.)).))))).......... ( -31.50)
>DroSim_CAF1 254689 93 - 1
AAAUGGUAUA--------------UGGCGAAUGGCGAAUGGUAAAU-GG-------CGGAUGGCAGCGCGUUGCUCAUACGCCAUGUG-GUGCCUGC-GGUGUGCCAAUAAUGCUGG
...(((((((--------------(.(((...((((........((-((-------((.(((((((....)))).))).))))))...-.)))))))-.)))))))).......... ( -35.50)
>DroEre_CAF1 247582 114 - 1
AAAUGGCAAAUGGUAAAUGGCGAAUGGUAAAUGGCGAAUGGUAAAU-GGCGGAUGGCGGAUGGCAGCGCGUUGCUCAUACGCCAUGUG-GUGCCUGC-GGUGUGCCAAUAAUGCUGG
....((((..(((((.((.(((...((((.((((((.(((((((..-.(((..((.(....).)).))).)))).))).))))))...-.)))))))-.)).)))))....)))).. ( -38.50)
>DroWil_CAF1 322857 92 - 1
UACUUAUAUA--------------UGUUGUC-UUCCUUUGGAAAUCAUA--------ACAGCUUGAAAUGUUGCGCAUACGACAUGUGUGCGCCUCUUCCUACUCCAAUAAUCCA--
..........--------------.......-.....(((((......(--------(((........))))((((((((.....))))))))..........))))).......-- ( -18.10)
>DroYak_CAF1 264056 86 - 1
AAAUGGCGAA---------------------UAGCGAAUGGUAAAU-GG-------CGGAUGGCAGCGCGUUGCUCAUACGCCAUGUG-GUGCCUGC-GGUGUGCCAAUAAUGCUGG
...((((..(---------------------((.((...((((.((-((-------((.(((((((....)))).))).))))))...-.))))..)-).))))))).......... ( -31.60)
>consensus
AAAUGGUAAA______________UGG_GAAUGGCGAAUGGUAAAU_GG_______CGGAUGGCAGCGCGUUGCUCAUACGCCAUGUG_GUGCCUGC_GGUGUGCCAAUAAUGCUGG
...(((((......................((((((.(((.....................(((((....)))))))).))))))......(((....))).))))).......... (-11.53 = -12.62 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:32 2006