Locus 6414

Sequence ID 2L_DroMel_CAF1
Location 18,010,071 – 18,010,165
Length 94
Max. P 0.658988
window10234

overview

Window 4

Location 18,010,071 – 18,010,165
Length 94
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 83.65
Mean single sequence MFE -27.92
Consensus MFE -21.49
Energy contribution -22.22
Covariance contribution 0.72
Combinations/Pair 1.20
Mean z-score -1.83
Structure conservation index 0.77
SVM decision value 0.26
SVM RNA-class probability 0.658988
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18010071 94 + 22407834
GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGCUGCCAAAGGGUUGAAAGGAACCCUUUCUUUCUUUA-------
........((((((...(((....)))...))))))..((((((((.(....).))))))))..(((((..((((((...))))))..))))).------- ( -29.40)
>DroSec_CAF1 225902 94 + 1
GCGAACCAGUUUGGAAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGCUGCCAAAGGGUUGAAAGGAACCCUUUCUUUCUUUA-------
........((((((...(((....)))...))))))..((((((((.(....).))))))))..(((((..((((((...))))))..))))).------- ( -29.40)
>DroSim_CAF1 225611 94 + 1
GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUUUCGGCUGCCAAAGGGUUGGAAGGAACCCUUUCUUUCUUUA-------
...((((..((((((........(((((......))))).((((((((....)))))))))))))).))))((((((((....))))))))...------- ( -30.60)
>DroEre_CAF1 218721 101 + 1
GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACUCUGCCGGUUGCCAAGGGGUUAAAAAGAACCCUUUCUUCCCUUAUAUAUUU
((.((.....)).))...........((((((.((((.(.(((....).))))))))))))).((((((((......))))))))................ ( -24.90)
>DroYak_CAF1 235282 99 + 1
GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGUUGCCAAAGGGUUAAAAAGAACCUUUUCUUCCUUUAUGCAA--
(((.....((((((...(((....)))...))))))..((((((((.(....).)))))))).((((((((......)))))))).........)))..-- ( -25.70)
>DroAna_CAF1 214267 95 + 1
GUCAACCAGUUUGGCAACAUAAUUAUGCAACGAUGCAUGCAGCUGGGGACU--UCCAGA-A-UAAAAGGGUCAAAAGAACCCUUUCUUUCAGCAACCAG--
(((..((((((((....))....((((((....)))))).)))))).))).--....((-(-..((((((((....).)))))))..))).........-- ( -27.50)
>consensus
GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGCUGCCAAAGGGUUGAAAAGAACCCUUUCUUUCUUUA_______
........((((((...(((....)))...))))))..((((((((........)))))))).((((((((......))))))))................ (-21.49 = -22.22 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:24 2006