Locus 6413

Sequence ID 2L_DroMel_CAF1
Location 18,005,994 – 18,006,093
Length 99
Max. P 0.500000
window10233

overview

Window 3

Location 18,005,994 – 18,006,093
Length 99
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 85.34
Mean single sequence MFE -29.35
Consensus MFE -17.39
Energy contribution -20.27
Covariance contribution 2.88
Combinations/Pair 1.03
Mean z-score -2.00
Structure conservation index 0.59
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18005994 99 + 22407834
CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAU----------GUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCACUUGCUUUGUUUUUC-CGCGGAAUU
.((((((((.....))))))))..(((((....----------..))))).((((....((((..............)))).))))...........(((-....))).. ( -23.34)
>DroSec_CAF1 222017 109 + 1
CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAUAUAUGUGAGUGUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCGCUUGCUCUGUUUUUC-CGCGGAAUU
.((((((((.....))))))))..(((((((((....))))))))).....(..(((..((((..............))))...)))..)(((((.....-.)))))... ( -35.24)
>DroSim_CAF1 221096 109 + 1
CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAUAUAUGUGAGUGUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCGCUUGCUCUGUUUUUC-CGCGGAAUU
.((((((((.....))))))))..(((((((((....))))))))).....(..(((..((((..............))))...)))..)(((((.....-.)))))... ( -35.24)
>DroEre_CAF1 212546 102 + 1
---AGGUGGUGAAUCCAGUUCCUCUAAAUUCAUGUGUGUGC--G---GUGUGUGAGCUGGCCAUUUCACUCUCAUUUCGACAACGCAUGCUUUGUUUUUCUCGCGGAAUU
---...(((.....)))(((((.(.((((.(((((((...(--(---(.(((.(((.(((.....)))))).))).)))...)))))))....)))).....).))))). ( -23.60)
>consensus
CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAUAUAUGUGA__GUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCGCUUGCUCUGUUUUUC_CGCGGAAUU
.((((((((.....))))))))...((((.(((((......))))).))))((((((..((((..............))))...))))))(((((.......)))))... (-17.39 = -20.27 +   2.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:23 2006