Locus 6405

Sequence ID 2L_DroMel_CAF1
Location 17,988,101 – 17,988,202
Length 101
Max. P 0.845265
window10222

overview

Window 2

Location 17,988,101 – 17,988,202
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.86
Mean single sequence MFE -26.50
Consensus MFE -15.08
Energy contribution -14.33
Covariance contribution -0.75
Combinations/Pair 1.29
Mean z-score -2.10
Structure conservation index 0.57
SVM decision value 0.77
SVM RNA-class probability 0.845265
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17988101 101 + 22407834
UGUGGAGG-AAGGGAGCGCUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGUGCGAUAAAAUG-GUUUAUUUGCAAAAGUUCUCUGCAUAAAAAUACAUAA
((..((((-(.(((((((.......)))(((((.....))))).)))).....(((((((((...-.)))).)))))....)))))..))............. ( -25.00)
>DroVir_CAF1 262562 97 + 1
GAAGGAA---GAGCAGCAUUUAUAACGCUUGUGUGGAUUAUAAAUCCCACCGGCACAAUAAACUG-CUUUAUUUGCAAAAGUUUUGUGCCUGAAAGGGCAC--
......(---((((((..(((((...(((.(((.((((.....))))))).)))...))))))))-))))...............((((((....))))))-- ( -30.30)
>DroEre_CAF1 194748 97 + 1
UGUGGAG-----GGAGCACUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGUGCGAUAAAAUG-GUUUAUUUGCAAAAGUUCUCUGCAUAAAAAUACAUAA
((((.((-----(((((..((((..((((.(((.((((.....))))))).))))..))))....-((......))....))))))).))))........... ( -27.00)
>DroYak_CAF1 210003 94 + 1
UGUGG---------AGCACUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGCGCGAUAAAAUGGGUUUAUUUGCAAAAGUUCUCUGCAUAAAAAUACGUAA
((..(---------((.((((.....(((.(((.((((.....))))))).)))((((((((.....)))).))))..)))).)))..))............. ( -26.00)
>DroMoj_CAF1 309349 97 + 1
UGUAGAG---GCGCAGCAUUUAUAACGCUUGUGUGGAUUAUAAAUCCCACUGGCACAAUAAACUG-CUUUAUUUGCAGAAGUUUUGUGCAUAAAAAGGCAC--
((((((.---((...)).))))))..(((((((.((((.....)))))))..((((((....(((-(.......)))).....))))))......))))..-- ( -26.20)
>DroAna_CAF1 194624 102 + 1
GCAAAAGGUGUGGGAGAACUUAUAACGCUUGUGUGGAUUACCAUUCCCAUGGGCACAAUAAACUG-CUUUAUUUGCGAAAGUUCUGUGCAUGAAAGGACUACA
(((((.(.((((((....)))))).)(((..((.(((.......)))))..)))...........-.....)))))...((((((.........))))))... ( -24.50)
>consensus
UGUGGAG_____GGAGCACUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGCACAAUAAAAUG_CUUUAUUUGCAAAAGUUCUCUGCAUAAAAAGACAUAA
............((((.((((.....(((.(((.((((.....))))))).)))..((((((.....)))))).....)))).))))................ (-15.08 = -14.33 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:12 2006