Locus 6403

Sequence ID 2L_DroMel_CAF1
Location 17,981,568 – 17,981,681
Length 113
Max. P 0.927316
window10219

overview

Window 9

Location 17,981,568 – 17,981,681
Length 113
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 94.64
Mean single sequence MFE -31.94
Consensus MFE -28.26
Energy contribution -28.02
Covariance contribution -0.24
Combinations/Pair 1.19
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 1.18
SVM RNA-class probability 0.927316
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17981568 113 - 22407834
UUCACUUUCCUGCCGAAGAUAGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA-UACAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA
..........(((((..((((.....(((((....)).(((...(((.(((((((((....)))))...))-)).)))....)))...))).))))..)))))........... ( -31.40)
>DroSec_CAF1 197536 113 - 1
UUCACUUUCCUGCCGAAGAUAGUAUAGCCAGAAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA-UCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA
..........(((((..((((.....(((.((....))(((...........(((((....)))))((...-.)).......)))...))).))))..)))))........... ( -29.10)
>DroSim_CAF1 196076 113 - 1
UUCGCUUUCCUGCCGGAGAUAGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA-UCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA
...(((.((.(((((..(((((((((((.(((........))).))))))..(((((....)))))((...-.)).....)))))..)))))....)).)))............ ( -34.60)
>DroEre_CAF1 187753 114 - 1
UUCACUUUCCUGCCGAAGGCUGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCCAGCGGAGGAAGCUCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA
..........((((((.((((....))))((....)).(((...........(((((....)))))(((.((....)).)))))).))))))...................... ( -31.70)
>DroYak_CAF1 200279 114 - 1
UUCACUUUCCUGCCGAAGGUGGUAGAACCAGGAAACUCGACUUAGUUCUAUUUCCGCUUGAGCGGAGGAAGCUCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA
..........((((((.((..(((((((.(((........))).)))))))..))(((.((((.......)))).)))........))))))...................... ( -32.90)
>consensus
UUCACUUUCCUGCCGAAGAUAGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA_UCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA
..........((((((.(((((((((((.(((........))).))))))(((((((....)))))))............))))).))))))...................... (-28.26 = -28.02 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:09 2006