Locus 640

Sequence ID 2L_DroMel_CAF1
Location 1,932,056 – 1,932,162
Length 106
Max. P 0.514987
window1045

overview

Window 5

Location 1,932,056 – 1,932,162
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.91
Mean single sequence MFE -31.85
Consensus MFE -22.86
Energy contribution -22.42
Covariance contribution -0.44
Combinations/Pair 1.32
Mean z-score -0.94
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.514987
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1932056 106 - 22407834
-----------AUAUAU---GAAACUUACCCAGCUGGAUAGGCCAGCAGGCCGCUGACUGGGGACACAUCCAGAGCCGCAUUGCUGCACACGGUGAGGCCCAGGACCUUUUUGAGUUUUA
-----------.....(---(((((((((((((..((...((((....)))).))..)))))......(((.(.(((.(((((.......))))).))).).)))......))))))))) ( -37.90)
>DroVir_CAF1 118008 102 - 1
U------------------AGGAACUUACCCCGCUGGAUAGGCCAGCAGGCCGCUGACAGGUGACACAUCGAGUGCUGCAUUGCUGCAAACAGUCAGUCCCAAGACUCUUUUGAGUUUUA
.------------------.((.......((.(((((.....))))).))..((((((.(....).......((..((((....)))).)).)))))).))(((((((....))))))). ( -33.10)
>DroGri_CAF1 118553 120 - 1
GGUUUGAGAAUGUAUCUGAAAAUACUUACCCCGCUGGAUAGGCCAGCAGGCCGCUGACGGGCGACACAUCCAACGCCGCAUUGCUGCAAACAGUUAGGCCCAAGACUUUUUUGAGUUUUA
((..((((.((..........)).))))..))(((((.....))))).((((((((...((((..........))))(((....)))...))))..)))).(((((((....))))))). ( -35.40)
>DroWil_CAF1 139633 98 - 1
----------------------UGCUUACCCCGCCGGAUAGGCCAAAAGGCCGCUGAUGGGUGAUACAUCCAAUGCCGCAUUACUGCAUACAGUCAGACCCAAAACCUUUUUGAGUUUUA
----------------------.............((...((((....)))).((((((((((...)))))......(((....))).....)))))..))((((((.....).))))). ( -22.90)
>DroMoj_CAF1 129012 102 - 1
C------------------AAGGACUCACCCUGCAGGAUAGGCCAGCAGGCCGCUGACUGGCGACACGUCGAGUGCCGCAUUGCUGCAGACAGUUAGACCCAAGACUCUUUUGAGUUUUA
.------------------..((.((.((.((((((....((((....))))........(((.(((.....))).)))....))))))...)).)).)).(((((((....))))))). ( -34.30)
>DroPer_CAF1 127115 102 - 1
-----------GUUU-------UUCUUACCCCGCUGGAUAGGCCAGGAGGCCGCUGACUGGUGAAACAUCCAACGCCGCAUUGCUGCACACAGUCAGACCCAAGACUUUUUUGAGUUUUA
-----------....-------.............((...((((....)))).((((((((((..........))))(((....)))....))))))..))(((((((....))))))). ( -27.50)
>consensus
______________________UACUUACCCCGCUGGAUAGGCCAGCAGGCCGCUGACUGGUGACACAUCCAAUGCCGCAUUGCUGCAAACAGUCAGACCCAAGACUUUUUUGAGUUUUA
...................................((...((((....)))).(((((.((((..........))))(((....))).....)))))..))(((((((....))))))). (-22.86 = -22.42 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:39 2006