Locus 64

Sequence ID 2L_DroMel_CAF1
Location 240,104 – 240,206
Length 102
Max. P 0.500000
window98

overview

Window 8

Location 240,104 – 240,206
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 83.45
Mean single sequence MFE -25.54
Consensus MFE -16.29
Energy contribution -17.02
Covariance contribution 0.73
Combinations/Pair 1.19
Mean z-score -2.04
Structure conservation index 0.64
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 240104 102 - 22407834
CAGGGGGUGCUCAGAAUCAGCACCAGCAGCAACCCCAACUGGCGGCCAUGUCUUCGCCGUUGCAUCAGCAAAAUCUGCCUAACAUGCACCAUUUAAUUCAA---C
..((.((((((.......)))))).((((((((.......(((((........))))))))))....(((.....)))......))).))...........---. ( -27.31)
>DroPse_CAF1 38816 101 - 1
CAGCAGCAGC----AACCAACAGCAGCAACAGCCCCAAAUCUCGGCCAUGUCCUCGCCUUUGCACCAGCAAAGCCUACCCAGUAUGCAUCAUUUGAUGCAACAGC
..((.((.((----........)).))....(((.........))).........))((((((....))))))........((.((((((....))))))))... ( -22.00)
>DroSim_CAF1 33435 102 - 1
CAGGAGGUGCUCAGAAUCAGCACCAGCAGCAACCCCAACUGGCGGCCAUGUCUUCGCCGUUGCAUCAGCAAAAUCUGCCUAACAUGCACCAUUUAAUUCAA---C
..((.((((((.......)))))).((((((((.......(((((........))))))))))....(((.....)))......))).))...........---. ( -27.31)
>DroEre_CAF1 33389 102 - 1
CAGGAGGUGCUCAAAAUCAGCACCAACAGCAACCCCAACUGGCGGCCAUGUCUUCGCCGUUGCAUCAGCAAAAUCUGCCCAACAUGCACCAUUUAAUUCAA---C
..((.((((((.......))))))....(((.........(((((........)))))((((...(((......)))..)))).))).))...........---. ( -25.90)
>DroYak_CAF1 35028 102 - 1
CAGGAGGUGCUCAGAAUCAGCACCAGCAGCAACCCCAACUGGCGGCCAUGUCUUCGCCGUUGCAUCAGCAAAACCUGCCCAACAUGCACCAUUUAAUCCAA---C
..(((((((((.......)))))).((((((((.......(((((........))))))))))....(((.....)))......))).........)))..---. ( -28.71)
>DroPer_CAF1 39233 101 - 1
CAGCAGCAGC----AACCAACAGCAGCAACAGCCCCAAAUCUCGGCCAUGUCCUCGCCUUUGCACCAGCAAAGCCUACCCAGUAUGCAUCAUUUGAUGCAACAGC
..((.((.((----........)).))....(((.........))).........))((((((....))))))........((.((((((....))))))))... ( -22.00)
>consensus
CAGGAGGUGCUCAGAAUCAGCACCAGCAGCAACCCCAACUGGCGGCCAUGUCUUCGCCGUUGCAUCAGCAAAACCUGCCCAACAUGCACCAUUUAAUUCAA___C
..(((((((((.......)))))).(((............(((((........))))).((((....)))).............))).........)))...... (-16.29 = -17.02 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:49 2006