| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,890,295 – 17,890,402 |
| Length | 107 |
| Max. P | 0.512924 |
| Location | 17,890,295 – 17,890,402 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.97 |
| Mean single sequence MFE | -25.94 |
| Consensus MFE | -15.63 |
| Energy contribution | -16.85 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17890295 107 + 22407834 GAGAGCGUACUAAAAGCAAAUCUGUGCGGUUAAACGCAAGUGUCAGCUGUCAUUUUUGUGGA------AAGAAUUCCGG---CAAAAAGUGCCAAGAAGCAUGAAAAAAAAGCGCA ....((((.......(((((..((.((((((..((....))...))))))))..)))))(((------(....))))((---((.....))))..................)))). ( -27.80) >DroGri_CAF1 148830 100 + 1 GGAAA--UGGGCAAAGCAAAUCUGUGCGGUUAAACGCAAGUGUCAGCUGUCAUUUUAGUGCG------AAGAAUGCGAA---AGAAAAAAUAU---UCACAUAUAA--AAAAAGAA .((((--(((....(((.......((((......)))).......))).))))))).(((.(------((.....(...---.)........)---)).)))....--........ ( -17.26) >DroSec_CAF1 109960 107 + 1 GAGAGCGUACUAAAAGCAAAUCUGUGCGGUUAAACGCAAGUGUCAGCUGUCAUUUUUGUGGA------AAGAAUUCCGG---CAAAAAGUGCCAAGGAGCAUGAAAAAAAAGCGCA ....((((.......(((((..((.((((((..((....))...))))))))..)))))(((------(....))))((---((.....))))..................)))). ( -27.80) >DroEre_CAF1 99730 111 + 1 GAGAGCGUACUAAAAGCAAAUCUGUGCGGUUAAACGCAAGUGUCAGCUGUCAUUUUUGUGGAAGAAGAAAGAAUUCCGG---CAAAAAAUGCCAAGGAGCAUGAAA--AAAGCGCA ....((((.......(((((..((.((((((..((....))...))))))))..)))))((((..........))))((---((.....)))).............--...)))). ( -27.70) >DroYak_CAF1 107027 105 + 1 GAGAGCGUACUAAAAGCAAAUCUGUGCGGUUAAACGCAAGUGUCAGCUGUCAUUUUUGUGGA------AAGAAUUCCGG---CAAAAAAUGCCAAGGAGCAUGAAA--AAAGCGCA ....((((.......(((((..((.((((((..((....))...))))))))..)))))(((------(....))))((---((.....)))).............--...)))). ( -27.80) >DroAna_CAF1 105084 108 + 1 GAAAGCGUACUAAAAGCAAAUCUGUGCGGUUAAACGCAAGUGUCAGCUGUCAUUUUUGUGGA------AAGAAUUCCGGCUGCAAAAAAUGCAAAGAA--AUGCAAUAGGAACGAA .....(((.(((...(((..(((.((((.....((....))(.((((((..((((((.....------))))))..)))))))......)))).))).--.)))..)))..))).. ( -27.30) >consensus GAGAGCGUACUAAAAGCAAAUCUGUGCGGUUAAACGCAAGUGUCAGCUGUCAUUUUUGUGGA______AAGAAUUCCGG___CAAAAAAUGCCAAGGAGCAUGAAA__AAAGCGCA ....((((.......(((((..((.((((((..((....))...))))))))..))))).............................((((......)))).........)))). (-15.63 = -16.85 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:42 2006