| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,888,837 – 17,888,932 |
| Length | 95 |
| Max. P | 0.568338 |
| Location | 17,888,837 – 17,888,932 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.85 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -8.49 |
| Energy contribution | -9.05 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17888837 95 - 22407834 AAGAUUUGGCUCAAAAAUUUAUUUAAUUUCAUUUUAUUGGAUGAAAGUCAAAGGCGACUAAAGUC-----U-CAGACAG------AGCCGGACG------AA-------GAGAAAAAAUC ....((((((((..............((((((((....))))))))(((..((((.......)))-----)-..))).)------)))))))..------..-------........... ( -24.30) >DroGri_CAF1 146899 110 - 1 AAGAUUUGGCUCAAAAAUUUAUUUAAUUUCAUUUUAUUCGC-CAAAGUCAAAGGCGUCUGCUGUCAGUGAGCCAGUGAGCCAGUGAGCCAAAAU-----GAAAACAAAA----GGAACUG ....((((((((..........................(((-(.........))))...(((((((.((...)).)))..))))))))))))..-----..........----....... ( -22.80) >DroSec_CAF1 108448 95 - 1 AAGAUUUGGCUCAAAAAUUUAUUUAAUUUCAUUUUAUUGGAUGAAAGUCAAAGGCGACGAAAGUC-----U-CAGACAG------AGCCGGACG------AA-------GAGGAAAAAUC ....((((((((..............((((((((....))))))))(((....(.(((....)))-----.-).))).)------)))))))..------..-------........... ( -25.50) >DroEre_CAF1 98335 102 - 1 AAGAUUUGGCUCAAAAAUUUAUUUAAUUUCAUUUUAUUGGAUGAAAGUCAAAGGCGUCGAAAGUC-----U-CAGACAG------AGCCAGACGA-AAUGGUAA-----GCGGGAAAAUC ....((((((((..............((((((((....))))))))(((..((((.......)))-----)-..))).)------)))))))...-........-----........... ( -25.10) >DroYak_CAF1 103015 101 - 1 AAGAUUUGGCUCAAAAAUUUAUUUAAUUUCAUUUUAUUGGAUAAAAGUCAAAGGCGUCGAAAGUC-----U-CAGACAG------AGGCAGACACAGACGAU-------GAGGGAAAAUC ..(((((..((((....((((((((((........)))))))))).(((....(.(((....(((-----(-(.....)------)))).))).).)))..)-------)))...))))) ( -22.50) >DroAna_CAF1 103630 88 - 1 AAGAUUUGGCUCAAAAAUUUAUUUAAUUUCAUUUUAUUGGAUGAAAGUCAAAGGCGACGAAAGUC-------CAGACAG------U--CGGC--------AA-------AAGGAAAAG-- .....((((((...............((((((((....))))))))(((....(.(((....)))-------).)))))------)--))).--------..-------.........-- ( -16.50) >consensus AAGAUUUGGCUCAAAAAUUUAUUUAAUUUCAUUUUAUUGGAUGAAAGUCAAAGGCGACGAAAGUC_____U_CAGACAG______AGCCAGACG______AA_______GAGGAAAAAUC ....(((((((......((((((((((........)))))))))))))))))(((.......)))....................................................... ( -8.49 = -9.05 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:41 2006