Locus 638

Sequence ID 2L_DroMel_CAF1
Location 1,910,208 – 1,910,307
Length 99
Max. P 0.687026
window1042

overview

Window 2

Location 1,910,208 – 1,910,307
Length 99
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 78.00
Mean single sequence MFE -24.70
Consensus MFE -12.36
Energy contribution -15.04
Covariance contribution 2.68
Combinations/Pair 1.15
Mean z-score -1.94
Structure conservation index 0.50
SVM decision value 0.32
SVM RNA-class probability 0.687026
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1910208 99 + 22407834
UAACAACUCAGGAUCUGUCGUCGGUUCCGUCACCAAUUUUGGUAUCCCGACACCUGCGAUAUGCACAAAUAUAAAUAUUAGUUUAAAUUGGGAAUAUAU---------------
..........(((.(((....))).)))...((((....)))).((((((....(((.....)))......(((((....)))))..))))))......--------------- ( -17.90)
>DroSec_CAF1 75161 99 + 1
UAAUAACUCAGGAUCUGUCGUGGGUUCCGUUACCAAUUUUGGUAUCCGGAAACCUGCGAUAUUCACAAAUAUGAAUAUUAGUUUAAAUUUGGAAUAUAU---------------
................((((..(((((((.(((((....)))))..))).))))..))))((((.(((((.(((((....))))).)))))))))....--------------- ( -29.90)
>DroSim_CAF1 59267 99 + 1
UAAUAACUCAGGAUCUGUCGUGGGUUCCGUUACCAAUUUUGGUACCCGGACACCUGCGAUAUGCACAAAUAUAAAUAUUAGUUUAAAUUUGGAAUAUAU---------------
...............(((((..(((((((.(((((....)))))..)))).)))..)))))....(((((.(((((....))))).)))))........--------------- ( -27.60)
>DroEre_CAF1 75175 113 + 1
CAGGAUCUCAGGAUCUGUCGUGGGUUCCUUCGCCAAUUUUGGUAUCCGAACUCCUACGAUACGCACAGAUGUAAAUAUUAUUUGAAAUAUGGAAAAAG-CUUACUUUACGUACA
..(((((....)))))(((((((((((....((((....))))....)))).)).))))).....((((((.......))))))...((((...((((-....)))).)))).. ( -24.10)
>DroYak_CAF1 84608 99 + 1
UGAUAUCUCAGGAUCUGUGUUGGGUUCUGUCACCAAUUUUGGUAUCCGAACUCGGGUGAUAAGCACAGAUGUAAAUACUAUUUGAAAUAUGGAAAAACU---------------
(.((((.((((((((((((((......(((((((...(((((...)))))....))))))))))))))))((....))..))))).)))).).......--------------- ( -24.00)
>consensus
UAAUAACUCAGGAUCUGUCGUGGGUUCCGUCACCAAUUUUGGUAUCCGGACACCUGCGAUAUGCACAAAUAUAAAUAUUAGUUUAAAUUUGGAAUAUAU_______________
...............((((((((((((((..((((....))))...)))).))))))))))....(((((.((((......)))).)))))....................... (-12.36 = -15.04 +   2.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:36 2006