| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,835,356 – 17,835,464 |
| Length | 108 |
| Max. P | 0.758703 |
| Location | 17,835,356 – 17,835,464 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -12.56 |
| Energy contribution | -13.67 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.758703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17835356 108 - 22407834 UAACUCGGGCUAACUUAUUUUUUGCCACUCGAACGCUUUGCUUUGGCUUCGAGCACCUG---GCCAAAAA--AAAUCCUAAACCCACUUGAGUUUUCAACUUUACAUCUCGUA .((((((((........((((((((((((((((.(((.......)))))))))....))---).))))))--).........)))....)))))................... ( -22.53) >DroSec_CAF1 49293 83 - 1 UAACUCGGGCUAACUUAUUUUUUGCCACUCGAACGCUUUGCUUUGGCUUCGAGCACCUG---GCCAAACG-G-----CCAAACU---------------------GGCUCGUA .....(((((((...............((((((.(((.......)))))))))....((---(((....)-)-----)))...)---------------------)))))).. ( -27.20) >DroSim_CAF1 46598 109 - 1 UAACUCGGGCUAACUUAUUUUUUGCCACUCGAACGCUUUGCUUUGGCUUCGAGCACCUG---GCCAAAAA-AAAAUCCUAAACCCACUUGAGUUUUCAACUUUACAUCUCGUA .((((((((........((((((((((((((((.(((.......)))))))))....))---).))))))-)..........)))....)))))................... ( -21.97) >DroEre_CAF1 45347 107 - 1 UAACUCGGGCUAACUUAUUUUUUGCCACUCGAACGCUUUGCUUUGGCUUCGAGCACCUG---GCCAAAA---AAAUCCUAAACCCACUUGAGUUCGAAACUUUACAUCUCGUA .((((((((........((((((((((((((((.(((.......)))))))))....))---).)))))---))........)))....)))))................... ( -23.09) >DroYak_CAF1 46031 107 - 1 UAACUCGGGCUAACUUAUUUUUUGCCACUCGAACGCUUUGCUUUGGCUUCGAGCAACUG---GCCAAAA---AAAUCCUAAGCCCACUUGAGUUUAAAACUUUACAUCUCGUA .((((((((((......((((((((((((((((.(((.......)))))))))....))---).)))))---))......)))))....)))))................... ( -28.20) >DroAna_CAF1 50207 105 - 1 UAACUUCGGCCAAGUUAUUUUUUGCCACACGAACGCUUUGCUUUGGCUUCAAGCACCUGCCGGCCAAGGCCCUGGUCCUGGUCCCCCCCAAAUUUGCAACUUGUC-------- .......(((.(((.....))).)))......(((..((((...(((...........)))(((((.(((....))).)))))............))))..))).-------- ( -23.40) >consensus UAACUCGGGCUAACUUAUUUUUUGCCACUCGAACGCUUUGCUUUGGCUUCGAGCACCUG___GCCAAAA___AAAUCCUAAACCCACUUGAGUUUGCAACUUUACAUCUCGUA .(((((.(((.............))).((((((.(((.......)))))))))....................................)))))................... (-12.56 = -13.67 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:29 2006