| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,794,682 – 17,794,802 |
| Length | 120 |
| Max. P | 0.519055 |
| Location | 17,794,682 – 17,794,802 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.39 |
| Mean single sequence MFE | -46.39 |
| Consensus MFE | -31.55 |
| Energy contribution | -29.06 |
| Covariance contribution | -2.49 |
| Combinations/Pair | 1.66 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17794682 120 - 22407834 AUAAAUGAGUGCUUGCAUGAAGGUAAAGGGAAGUGUGGCUCCAAUUCCUGUACCUCCAAAGUUGAGUUGGGCAAAAAACCCUAUACGGUUAGUGUAAAUCGCACUGCUUUGGUGGGCGUU ..........(((..(....(((((..(((((...((....)).))))).))))).((((((...((.(((.......)))...))....(((((.....))))))))))))..)))... ( -33.20) >DroPse_CAF1 88551 120 - 1 AUCAACGAGUGCCUGCACGAGGGCAGGGGCAAGUGCGGCUCCGGCUCGUGCUCCUCGAGGGUGGAGCUGGGCAAGAGGCCCUACACGGUGAGCGUGAACCGCACGGCCCUCGUGGGCGUC ....((((((((((......)))).(((((.......))))).))))))((.((.(((((((.(.((.((((.....))))..((((.....))))....)).).))))))).))))... ( -57.90) >DroEre_CAF1 10745 120 - 1 AUAAAUGAAUGCUUGCACGAGGGUAAAGGAAAGUGUGGCUCCAGCUCCUGCACCUCCAAAGUGGAGUUGGGCAAAAAACCCUAUACGGUUAGUGUGAACCGCACGGCCUUGGUGGGUGUG ........(((((..(.((((((((.(((........((.((((((((.((.........)))))))))))).......))).))).....(((((...)))))..))))))..))))). ( -39.96) >DroWil_CAF1 10855 120 - 1 AUCAACGAAUGCCUACAGGAGGGAAAAGGUAAAUGCGGUUUGAGCUCUUGCACUUCUCGCAGUGAAUUGGGCAAACGUCCAUACACGGUGAGUGUGAAUCGCACCGCUCUGGUGGGUGUU .......(((((((((.((((((..........((((((((..((....))((..(((((.(((...(((((....)))))..))).))))).)))))))))))).)))).))))))))) ( -43.20) >DroAna_CAF1 8260 120 - 1 AUCAACGAGUGUCUGCACGAGGGCCGCGGCAAGUGCGGAUCCGGAUCGUGCACUUCGCGAGUGGAGCUGGGCAAGAAGCCGUACACAGUCAGUGUGAACCGGACCGCCCUGGUGGGCGUU ...........(((((((....((....))..)))))))(((((.(((..(.(((((....)))))...(((.....)))...........)..))).))))).(((((....))))).. ( -46.10) >DroPer_CAF1 86943 120 - 1 AUCAACGAGUGCCUGCACGAGGGCAGGGGCAAGUGCGGCUCCGGCUCGUGCUCCUCGAGGGUGGAGCUGGGCAAGAAGCCCUACACGGUGAGCGUGAACCGCACGGCCCUCGUGGGCGUC ....((((((((((......)))).(((((.......))))).))))))((.((.(((((((.(.((.((((.....))))..((((.....))))....)).).))))))).))))... ( -58.00) >consensus AUCAACGAGUGCCUGCACGAGGGCAAAGGCAAGUGCGGCUCCAGCUCGUGCACCUCGAGAGUGGAGCUGGGCAAAAAGCCCUACACGGUGAGUGUGAACCGCACGGCCCUGGUGGGCGUU ..........((((((...(((((........((((((.((((((((................))))))))............((((.....))))..)))))).))))).))))))... (-31.55 = -29.06 + -2.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:23 2006