Locus 6362

Sequence ID 2L_DroMel_CAF1
Location 17,779,053 – 17,779,161
Length 108
Max. P 0.598596
window10168

overview

Window 8

Location 17,779,053 – 17,779,161
Length 108
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 88.36
Mean single sequence MFE -24.28
Consensus MFE -17.58
Energy contribution -18.54
Covariance contribution 0.96
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.72
SVM decision value 0.13
SVM RNA-class probability 0.598596
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17779053 108 + 22407834
---GCUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUACGUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC----
---(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))........---- ( -24.60)
>DroSec_CAF1 79118 108 + 1
---GUUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUACAUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCUACUUCUC----
---(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))........---- ( -22.60)
>DroEre_CAF1 90447 108 + 1
---GCGGGCUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUGCGUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC----
---...((((((.((.(((((...(((((((((...((.....))....))))))))))))))....................(((....)))..)).)))))).......---- ( -27.00)
>DroYak_CAF1 81465 108 + 1
---GCUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUGCGCUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC----
---(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))........---- ( -25.00)
>DroAna_CAF1 88237 115 + 1
CCGACUGCUUGUUAGUCCUGUCUAUUUUAAUAACUAACAAAUUGUGCGUUGAUGAAAAACAUCAUUAAUUAAAUAUGGAACGCAGCAUAUGCCCGCUGGCAGUAAGUUCUCGUUC
.(((..((((((((((..(((........)))))))))....(((((((((((((......))))))))......((.....)))))))((((....))))..))))..)))... ( -22.20)
>consensus
___GCUGCUUGUUAGAGAUGUCUAUUUUAAUUAUUAACAAAUUGUGCGUUGAUUAAAAACAUCAUUAAUUAAAUAUGUAUCGGGGCAUAUGCCAACUUGCAGCCACUUCUC____
...(((((..(((...(((((...(((((((((...((.....))....))))))))))))))....................(((....))))))..)))))............ (-17.58 = -18.54 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:17 2006