Locus 6351

Sequence ID 2L_DroMel_CAF1
Location 17,732,342 – 17,732,446
Length 104
Max. P 0.897612
window10151

overview

Window 1

Location 17,732,342 – 17,732,446
Length 104
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 87.22
Mean single sequence MFE -24.31
Consensus MFE -17.34
Energy contribution -16.70
Covariance contribution -0.64
Combinations/Pair 1.27
Mean z-score -2.46
Structure conservation index 0.71
SVM decision value 1.00
SVM RNA-class probability 0.897612
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17732342 104 - 22407834
GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCU------GGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAUGCUACUUCGCAAUACUGAUUAAUCUAUCAAAA
((((..............))))(((((((......)------))))))(((((...........)))))..((((..(((......))).))))(((......))).... ( -18.54)
>DroSec_CAF1 32311 110 - 1
GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCUGAAAAUGGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAGGUUACUUUACAAUACUGAUUAAUCUAUCAAAA
((((.(((..............((((((((((......))))))))))(((((...........)))))...))).)))).............((((......))))... ( -23.20)
>DroSim_CAF1 34746 104 - 1
GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCU------GGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAGGCUACUUUACAAUACUGAUUAAUCUAUCAAAA
((((.(((..............(((((((......)------))))))(((((...........)))))...))).)))).............((((......))))... ( -22.90)
>DroEre_CAF1 42161 99 - 1
GCCUUCGCACAUU-----AGGCUUUUCCAUUUUCCU------GGAAAAUGUCCCCGGAUUGCCCGGAUAAAAGUGCAGGCUACUUUGCAAUACUGAUUAAUCAGCCAAAA
((((..((((...-----.((((((((((......)------)))))).))).((((.....))))......))))))))............((((....))))...... ( -28.90)
>DroYak_CAF1 34563 102 - 1
GCCUUCACACAUUAUCGCAGGGUUUUCCAUUUCUCU------GGAAAAUGUCCUUCGAUU--UCGGACGAAAGUGCAGGCUACUUAACAAUACUGAUUAAUCAGUUAAAA
((((.(((......(((.(((((((((((......)------)))))))..))).)))((--((....))))))).))))...........(((((....)))))..... ( -28.00)
>consensus
GCCUUCACACAUUAUCACAGGCUUUUCCAUUUCUCU______GGAAAAUGUCCUUCGAUUGCCCGGACAAAAGUGCAGGCUACUUUACAAUACUGAUUAAUCUAUCAAAA
((((.(((..............((((((..............))))))(((((...........)))))...))).)))).............((((......))))... (-17.34 = -16.70 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:59 2006