Locus 633

Sequence ID 2L_DroMel_CAF1
Location 1,873,994 – 1,874,090
Length 96
Max. P 0.805582
window1033

overview

Window 3

Location 1,873,994 – 1,874,090
Length 96
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 88.12
Mean single sequence MFE -23.15
Consensus MFE -16.93
Energy contribution -17.43
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -3.66
Structure conservation index 0.73
SVM decision value 0.63
SVM RNA-class probability 0.805582
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1873994 96 - 22407834
ACAUAAAAGCCGGCAUUUAUUCGAGGCACUGGCAACAUAAUGUUGCCACAUGCAACACACCCACGC-CA--ACACUCCACGCACAAACACAACC--ACACA
...........(((...........(((.(((((((.....)))))))..)))...........))-).--.......................--..... ( -18.45)
>DroSec_CAF1 43475 98 - 1
ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUUAUGUUGCCACAUGCAACACACCCACGC-CA--ACACUCCACGCACAAACACAACCGCACACA
...........(((...........(((((((((((.....)))))))).)))...........))-).--.........((............))..... ( -22.85)
>DroSim_CAF1 42432 98 - 1
ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUUAUGUUGCCACAUGCAACACACCCACGC-CA--ACACUCCACGCACAAACACAAGCACACACA
...........(((...........(((((((((((.....)))))))).)))...........))-).--.........((..........))....... ( -23.05)
>DroEre_CAF1 42334 96 - 1
ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUUAUGUUGCCACAUGCAACACACCCACGC-CA--GCACUCCGCGCACCAACACAACC--GCACA
........((.(((...........(((((((((((.....)))))))).)))...........))-).--)).....(((............)--))... ( -27.35)
>DroYak_CAF1 43105 96 - 1
ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUAAUGUUGCCACAUGCAGCACACCCACGC-CA--ACCCUCCUCGCACAAACACAGCC--GCACA
........((.(((.......(((((((((((((((.....)))))))).))).((........))-..--......))))..........)))--))... ( -28.13)
>DroAna_CAF1 45190 99 - 1
ACAUAAAAGCCGGCAUUUAUUCGUGGCAACGGCAACAUAAUGUUGCCACAUGCAACACGCUUCCACCCAACACACUUUACGCACGUACAAAAAU--ACGCU
.......(((..((........(((((((((.........)))))))))..((.....))....................))..(((......)--))))) ( -19.10)
>consensus
ACAUAAAAGCCGGCAUUUAUUCGAGGCAGUGGCAACAUAAUGUUGCCACAUGCAACACACCCACGC_CA__ACACUCCACGCACAAACACAACC__ACACA
........(((((.......)))..(((((((((((.....)))))))).)))...........................))................... (-16.93 = -17.43 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:28 2006