| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,650,838 – 17,650,928 |
| Length | 90 |
| Max. P | 0.621090 |
| Location | 17,650,838 – 17,650,928 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 95.04 |
| Mean single sequence MFE | -17.92 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.02 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17650838 90 - 22407834 ACACACUUUUCAAAAUGCACUCAGCCAAGAGAAUGAACAAGACCUGAAAUGCCCUUCAGGUAAGUUAACAAAUGUGCAGUCAGAGAUACA .......((((....((((((((..(....)..))).....(((((((......)))))))............)))))....)))).... ( -18.00) >DroSec_CAF1 46342 90 - 1 ACACACUUUUCAAAAUGCACUCAGCCAAGAGAAUGAAAAAGACCUGAAAUGCCCUUCAGGUAAGUUAACAAAUGUGCAGUCAGAGAUACA .......((((....((((((((..(....)..))).....(((((((......)))))))............)))))....)))).... ( -18.00) >DroSim_CAF1 32437 90 - 1 ACACACUUUUCAAAAUGCACUCAGCCAAGAGAAUGAACAAAACCUGAAAUGCCCUUCAGGUAAGUUAACAAAUGUGCAGUCAGAGAUACA .......((((....((((((((..(....)..))).....(((((((......)))))))............)))))....)))).... ( -17.90) >DroEre_CAF1 34014 90 - 1 ACACACUUUGUAAAUUGCACUCAGCCAAGAGAAUGAACAAGACCUGAAAUGCCCUUCAGGUAAGUUAACAAAUGUGCAGUCAGAGAUACA .....(((((...((((((((((..(....)..))).....(((((((......)))))))............))))))))))))..... ( -21.30) >DroYak_CAF1 48775 90 - 1 ACACACUUAGCAAAAUGCACUCAGCCAAGAGAAUGAACAAGACCUGAAAUGCCCUUCAGGUAAGUUAACAAAUGUGCAGUCAGAGAUACA .((((....((.....)).(((......)))....(((...(((((((......)))))))..)))......)))).............. ( -16.20) >DroAna_CAF1 27233 90 - 1 UCACACAUUUCAAAGUGCACUCAGCCAAGACAAAGAACAAGACCUGAAAUGCCCUUCAGGUAAGUUAACAAAUGUGCAGCCAAAGAUACA ...(((((((....(.((.....))).........(((...(((((((......)))))))..)))...))))))).............. ( -16.10) >consensus ACACACUUUUCAAAAUGCACUCAGCCAAGAGAAUGAACAAGACCUGAAAUGCCCUUCAGGUAAGUUAACAAAUGUGCAGUCAGAGAUACA ...............(((((((......)).....(((...(((((((......)))))))..))).......)))))............ (-14.85 = -15.02 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:27 2006