| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,638,751 – 17,638,848 |
| Length | 97 |
| Max. P | 0.816378 |
| Location | 17,638,751 – 17,638,848 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 79.74 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -14.74 |
| Energy contribution | -15.80 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17638751 97 + 22407834 AAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGC----ACAUACAUUUAAAUUACUCGAAAGGGUUGAGCG-----------------UGGGGACAUUGUGCUGAAAAUUACUCAAAGU .......(((((.((((....)))).)))))((----(((............((((....)))).....(-----------------((....))))))))................. ( -22.30) >DroSec_CAF1 34335 97 + 1 AAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGC----ACAUACAUUUAAAUUACUCGAAAGAGUUGAGCG-----------------UGGGGACAUUGUGCUGAAAAUUACUCAAAGU .......(((((.((((....)))).)))))((----(((............((((....)))).....(-----------------((....))))))))................. ( -23.20) >DroEre_CAF1 21927 97 + 1 AAAGCAAUCAGAAAAUGUUACCGUCGUCUGAGC----ACAUACAUUUAAAUUACUCGAAAGAGUUGAGCG-----------------UGGGGACAUUGUGCUGAAAAUGACUCAAAGU .......(((((..(((....)))..)))))((----(((............((((....)))).....(-----------------((....))))))))................. ( -22.90) >DroYak_CAF1 35293 97 + 1 AAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGC----ACAUACAUUUAAAUUACUCGAAAGAGUUGAGCG-----------------UGGGGACAUUGUGCUGAAAAUUACUCAAUAU .......(((((.((((....)))).)))))((----(((............((((....)))).....(-----------------((....))))))))................. ( -23.20) >DroAna_CAF1 15639 114 + 1 AAAGCAAUCAGAAAAUGUUACCGUUGUAUGUAC----ACAUACAUUUAAAUUACUCGAAAGAGUUGAGCGGUCUUCGGGUCUUAUGGAGGGGACAUUGCCAUGAAAAUGAGUCAAAGU .......(((...(((((..((((((((((...----.))))).........((((....))))..)))(..(....)..).......))..)))))....))).............. ( -27.70) >DroPer_CAF1 33650 80 + 1 AAAGCAAUCAGAAAAUGCUACCGUUGUGUGUGCGCACACACACAUUUAAAUUACUCGAAAGAGUUGAGCA-----------------GG---AUAUCGGA------------------ ..((((.........)))).(((.((((((((....))))))))........((((....))))......-----------------..---....))).------------------ ( -22.30) >consensus AAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGC____ACAUACAUUUAAAUUACUCGAAAGAGUUGAGCG_________________UGGGGACAUUGUGCUGAAAAUUACUCAAAGU .......((((..(((((..((...((.((........)).)).........((((....))))........................))..)))))...)))).............. (-14.74 = -15.80 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:26 2006