| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,631,821 – 17,631,915 |
| Length | 94 |
| Max. P | 0.517516 |
| Location | 17,631,821 – 17,631,915 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.03 |
| Mean single sequence MFE | -19.81 |
| Consensus MFE | -8.40 |
| Energy contribution | -9.34 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.42 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17631821 94 + 22407834 ---CGAAUAUCGAGUGCCAAUCUAGACGAC-----GUCGACAACGACG--GC---UGCACA-------CAUAAUGCAACCCAAACACACAGA-----AUGAAUAUAUAUACCAGGCACC ---..........(((((............-----((((....))))(--(.---((((..-------.....)))).))............-----................))))). ( -18.90) >DroGri_CAF1 14433 116 + 1 UAUUGUCUAUCGAGUGCCAAUCUAUACUUGCAACAGCCGAAGAAGUCGAUGC---UGCACAGUGCAAUCAUAUUGCAACAAAAGCGUAGCUGUAUUUGAAAAGGAUUGAUUGAUUGAUU ....(((.(((((....((((((.........((((((((.....)))((((---(......((((((...)))))).....))))).))))).........)))))).))))).))). ( -26.97) >DroSec_CAF1 27313 92 + 1 ---CGAAUAUCGAGUGCCAAUCUAGACGAC-----GUCGACAACGACG--GC---UGCACA-------CAUAAUGCAACCCAAACACACAGA-----AU--AUAUAUUCACCAGGCACC ---..........(((((............-----((((....))))(--(.---((((..-------.....)))).))..........((-----((--....))))....))))). ( -19.70) >DroEre_CAF1 15209 92 + 1 ---CGAAUAUCGAGUGCCAAUCUAGACGAG-----GUCGACAACGACG--GC---UGCACA-------CAUAAUGCAACCCAAACACAUGGA-----AU--AUAUAUUCACCAGGCACC ---..........(((((............-----((((....))))(--(.---((((..-------.....)))).))..........((-----((--....))))....))))). ( -19.20) >DroYak_CAF1 28110 92 + 1 ---CGAAUAUCGAGUGCCAAUCUAGACGAG-----GUCGACAACGACG--GC---UGCACA-------CAUAAUGCAACCCAAACACACAGA-----AU--AUAUAUUCACCAGGCACC ---..........(((((............-----((((....))))(--(.---((((..-------.....)))).))..........((-----((--....))))....))))). ( -19.40) >DroAna_CAF1 8692 83 + 1 ---CGAAUAUCGAGUGCCAAUCUAGACGAU-----GUCGACAACGACA--GCUCCUGCACA-------CAAAAUGCAACCCAAACACACACA--------------CUCA-----CAUC ---........(((((........((...(-----((((....)))))--..)).((((..-------.....)))).............))--------------))).-----.... ( -14.70) >consensus ___CGAAUAUCGAGUGCCAAUCUAGACGAG_____GUCGACAACGACG__GC___UGCACA_______CAUAAUGCAACCCAAACACACAGA_____AU__AUAUAUUCACCAGGCACC .............(((((.................((((....))))........((((..............))))....................................))))). ( -8.40 = -9.34 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:23 2006