Locus 632

Sequence ID 2L_DroMel_CAF1
Location 1,866,444 – 1,866,534
Length 90
Max. P 0.992547
window1032

overview

Window 2

Location 1,866,444 – 1,866,534
Length 90
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 72.41
Mean single sequence MFE -30.68
Consensus MFE -19.40
Energy contribution -18.60
Covariance contribution -0.80
Combinations/Pair 1.39
Mean z-score -2.30
Structure conservation index 0.63
SVM decision value 2.34
SVM RNA-class probability 0.992547
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1866444 90 - 22407834
CUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUACCUCAAGGAACUGGGUGCUCCGAACUACCUGCUGGGUGAGUUUAAUAUC------------GAAG---UUAA----
....((((((.(((.((((.(((.((((((........)))))).))).)))))))((((((.....))).)))........------------))))---))..---- ( -32.60)
>DroVir_CAF1 49231 98 - 1
CUGGGGCUUUAUCGAGAGCUUUCUAUUUUUGUAUCUCAAGGAGCUGGGCGCUCCUAACUACUUGUUGGGUAAGUUCACGCAAUUCU-----------GCCCUCAUUGCC
..(((((......((((((...........)).)))).(((((((((((...((((((.....))))))...))))).))..))))-----------)))))....... ( -28.20)
>DroPse_CAF1 39248 86 - 1
UUGGGGCUUCAUCGAGAGCUUUCUUUUCCUGUAUCUGAAGGAAUUGGGGGCACCCAACUAUCUGCUUGGUGAGUUCUC----------------GUCG---UCAU----
..(((..(((((((((.(((..(..(((((........)))))..)..)))...((......)))))))))))..)))----------------....---....---- ( -27.90)
>DroEre_CAF1 34694 101 - 1
CUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUACCUCAAGGAACUGGGGGCUCCAAACUACCUGCUGGGUGAGUUUAUCCGCCCUGGCCAAUUUG-AG---UUAU----
(..((((......(.((((((((.((((((........)))))).)))))))))((((((((.....))).)))))....))))..)........-..---....---- ( -40.40)
>DroYak_CAF1 35433 79 - 1
UUGGGGCUUCAUCGAGAGCUUCCUGUUCUUGUAUCUCAAGGAACUCGGAGCUCCAAACUACCUGCUGGGUAAGUUUUCC------------------------------
.(((((((((..(((((((.....)))))))..((.....))....)))))))))(((((((.....))).))))....------------------------------ ( -26.10)
>DroPer_CAF1 39262 86 - 1
UUGGGGCUUCAUCGAGAGCUUCCUCUUCCUGUAUCUGAAGGAAUUGGGGGCACCCAACUAUCUGCUUGGUGAGUUCUC----------------GUCG---UCAU----
..(((..(((((((((.((((((..(((((........)))))..))))))...((......)))))))))))..)))----------------....---....---- ( -28.90)
>consensus
CUGGGGCUUCAUCGAGAGCUUCCUGUUCCUGUAUCUCAAGGAACUGGGGGCUCCAAACUACCUGCUGGGUGAGUUCAC________________G__G___UCAU____
...(((((.....(.((((((((..(((((........)))))..)))))))))....((((.....)))))))))................................. (-19.40 = -18.60 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:27 2006