Locus 631

Sequence ID 2L_DroMel_CAF1
Location 1,864,323 – 1,864,425
Length 102
Max. P 0.974098
window1031

overview

Window 1

Location 1,864,323 – 1,864,425
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.76
Mean single sequence MFE -30.57
Consensus MFE -28.28
Energy contribution -27.96
Covariance contribution -0.32
Combinations/Pair 1.13
Mean z-score -1.56
Structure conservation index 0.93
SVM decision value 1.72
SVM RNA-class probability 0.974098
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1864323 102 - 22407834
UUUUCUGCAAGUGAACUCCAUUUAGA-AGCAAGUGGGGCACUGAAGAGGCGGUUGUUUUGUGUGUUUGGCAUUUGGUUGCCUUUGUCGAACGGUCGUUUCUUU
.........((((..((((((((...-...))))))))))))(((((((((..(((((.........((((......))))......)))))..))))))))) ( -31.26)
>DroSec_CAF1 33716 103 - 1
UUUUCUGCAAGUGAACUCCAUUUAGGAGGCAAGUGGGGCACUGAAGAGGCGGUUGUUUUGUGUGUUUGGCAUUUGGUUGCCUUUGUCGAGCGGUCGUUUCUUU
.........((((..((((((((.......))))))))))))(((((((((..(((((.........((((......))))......)))))..))))))))) ( -30.76)
>DroSim_CAF1 32838 103 - 1
UUUUCUGCAAGUGAACUCCAUUUAGGAGGCAAGUGAGGCACUGAAGAGGCGGUUGUUUUGUGUGUUUGGCAUUUGGUUGCCUUUGUCGAGCGGUCGUUUCUUU
...(((.((..((..((((.....)))).))..)))))....(((((((((..(((((.........((((......))))......)))))..))))))))) ( -28.66)
>DroEre_CAF1 32642 103 - 1
UUUUCUGCAAGUGAACUCCAUUUAGGAGGCAAGUGGGGCAUUGGAGAGGCGGUUGUUUUGUGUGUUUGGCAUUUGGUUGCCUUUGUCGAGCGGUCGUUUCUUU
....((.((..((..((((.....)))).))..)).))....(((((((((..(((((.........((((......))))......)))))..))))))))) ( -29.46)
>DroYak_CAF1 33369 103 - 1
UUUUUUCCAAGUGAACUCCAUUUAGGAGCCAAGUGGGACAUUGAAGAGGCGGUUGUUUUGUGUGUUUGGCAUUUGGUUGCCAUUGUCGGGCGGUCGUUUCUUU
....(((((..((..((((.....)))).))..)))))....(((((((((..(((((..((....(((((......))))).))..)))))..))))))))) ( -32.70)
>consensus
UUUUCUGCAAGUGAACUCCAUUUAGGAGGCAAGUGGGGCACUGAAGAGGCGGUUGUUUUGUGUGUUUGGCAUUUGGUUGCCUUUGUCGAGCGGUCGUUUCUUU
.........((((..((((((((.......))))))))))))(((((((((..(((((.........((((......))))......)))))..))))))))) (-28.28 = -27.96 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:26 2006