| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,564,341 – 17,564,450 |
| Length | 109 |
| Max. P | 0.631240 |
| Location | 17,564,341 – 17,564,450 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.51 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -8.30 |
| Energy contribution | -11.19 |
| Covariance contribution | 2.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17564341 109 + 22407834 UUAAGAAUUUCUC--GUAG-----UGUUUGUUUUUCCACCCACACAGAUGCUACAACACACAAAAAUAGGUGUACAUGUGUGUGUCUGUGUGACUGCUUGCCUGAGGGAUUUAUGC ....((((..(((--((((-----(...((......))..(((((((((((((((..((((........))))...)))).))))))))))))))))......)))..)))).... ( -31.50) >DroSec_CAF1 80668 109 + 1 UUAUGAAUUUCUC--GUAG-----UGUUUGUGUUUCCACCCACACAGAUGCUGCAACACACAAAAAUAGGUUUACAUGUGUGUGUGUGUGUGACUGCUUGCCUGAGGGAUUUAUGC .(((((((..(((--((((-----(((((((((........))))))))))))).(((((((...(((.((....)).)))...)))))))............)))..))))))). ( -38.80) >DroSim_CAF1 80569 105 + 1 UUAAGAAUUUCUC--GUAG-----UGUUUGUGUUUCCACCCACACAGAUGCUGCAACACACAAAAAUAGGUGUACAUGUGUG----UGUGUGACUGCUUGCCUGAGGGAUUUAUGC ....((((..(((--((((-----(((((((((........)))))))))))))..((((((...(((.((....)).))).----))))))...........)))..)))).... ( -35.30) >DroEre_CAF1 79539 102 + 1 UAAAGAUUUUCUC--CUAG-----UGUUUGUGUUUCCACCCACACAGAUGCUGAAGCACCCAGAAA-AGGUGUACAUGUGUG------UAUGCCUGCUUGCCUGAGGGAUUUAUGC ....((.(..(((--.(((-----(((((((((........))))))))))))..(((...((...-(((((((((....))------))))))).)))))..)))..).)).... ( -29.70) >DroYak_CAF1 81135 102 + 1 UAAAGAAUUUCUC--CUAG-----UGCUUGUGUUUCCACCCACACAGAUGCUAGAACCCACAAAAA-AGGUGUACAUGUGUG------UAUGCCUGCUUGCCUGAGGGAUUUAUGC ....((((..(((--((((-----(..((((((........))))))..)))))......(((...-(((((((((....))------)))))))..)))...)))..)))).... ( -30.90) >DroAna_CAF1 86551 95 + 1 UU-----UUUCUCUCUCUGUGGCAUAUUUGCAAUUGCACCCACACGCAUA------CACGCUCAAAUGCACUCACAU----A------CACGACUGCAUGCCUUAGGGACUUAUCC ..-----......((((((.(((((....((...(((........)))..------...))......(((.((....----.------...)).)))))))).))))))....... ( -20.40) >consensus UUAAGAAUUUCUC__GUAG_____UGUUUGUGUUUCCACCCACACAGAUGCUGCAACACACAAAAAUAGGUGUACAUGUGUG______UAUGACUGCUUGCCUGAGGGAUUUAUGC ....((((..(((............((((((((........)))))))).......((((((..............)))))).....................)))..)))).... ( -8.30 = -11.19 + 2.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:42 2006