| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,546,046 – 17,546,154 |
| Length | 108 |
| Max. P | 0.749684 |
| Location | 17,546,046 – 17,546,154 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.16 |
| Mean single sequence MFE | -31.46 |
| Consensus MFE | -8.34 |
| Energy contribution | -9.78 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17546046 108 + 22407834 GGCUGGCUUGCUUUU-GGCUUGGCAUUAUCUCUCCUUGCCGU----UUCGUGUAUUUAGU-UAAUGCUGAAUAUAGG--AGUAAGUGCUGCUAAAGUAGGGCUGGCACAGCAACUU .(((((((.((....-.))..)))............((((..----(((.((((((((((-....)))))))))).)--))..(((.((((....)))).)))))))))))..... ( -37.30) >DroSec_CAF1 63042 103 + 1 GGCAGGCUUGCUUUU------GGCAUUAUCUCUUGUUG-CGU----UUCGUGUAUUUAGUUUAAUGCUGAAUAUAGG--AGUAAGUGCUGCGAAAGUAGGGCUGGCACAGCAACUU (.(((.(((((((((------((((((..(((((...(-((.----..)))(((((((((.....))))))))))))--))..)))))..)))))))))).))).).......... ( -35.30) >DroSim_CAF1 62547 107 + 1 GGCUGGCUUGCUUUU-GGCUUGGCAUUAUCUCUUGUUG-CGU----UUCGUGUAUUUAGU-UAAUGCUGAAUAUAGG--AGUAAGUGCUGCGAAAGUAGGGCUGGCACAGCAACUU .(((((((.(((...-.((((((((.((.....)).))-)..----(((.((((((((((-....)))))))))).)--))))))).((((....))))))).))).))))..... ( -37.90) >DroEre_CAF1 63672 96 + 1 CCCUGGCUUGCUUUU-CGCUUGGCAUUAUCUCUCGUUG-UAUUUAGUUCGUGUAUUUGGU-U-----------------AGUAAAUGCAGCUAAAGUAGGGUUGGCACAGCAACUU .(((((((.((....-.))..)))..........((((-((((((.((((......))).-.-----------------).)))))))))).....))))((((......)))).. ( -20.30) >DroMoj_CAF1 70323 104 + 1 GGUCUG-UUGCAUUUGGGCUUUGGCUUACAUUGCAUUG-CGU---UUUCACGUUUUCAGC-UGCCAUUAGUUGGGCGCAUAUAAAUGCUGCUAGAA----GCUGCAAAAGU--UUU ......-.((((..(((((....)))))...))))(((-((.---((((.......((((-((....))))))(((((((....)))).))).)))----).)))))....--... ( -26.50) >consensus GGCUGGCUUGCUUUU_GGCUUGGCAUUAUCUCUCGUUG_CGU____UUCGUGUAUUUAGU_UAAUGCUGAAUAUAGG__AGUAAGUGCUGCUAAAGUAGGGCUGGCACAGCAACUU .(((((((((((.........))))..........................................................(((.((((....)))).)))))).))))..... ( -8.34 = -9.78 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:38 2006