Locus 630

Sequence ID 2L_DroMel_CAF1
Location 1,863,558 – 1,863,662
Length 104
Max. P 0.952317
window1030

overview

Window 0

Location 1,863,558 – 1,863,662
Length 104
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.57
Mean single sequence MFE -21.15
Consensus MFE -13.11
Energy contribution -12.87
Covariance contribution -0.25
Combinations/Pair 1.09
Mean z-score -2.05
Structure conservation index 0.62
SVM decision value 1.42
SVM RNA-class probability 0.952317
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1863558 104 - 22407834
CA-----AUCCCAUUCCCCGAACCCUA---ACUCUCA---CAAUCCAGCUGCACUCUC-AAAGCCGCUUGUCAAAGUUAAUUUCGUAAUUAAUUUUCAAUGCUUUGAGGCGAGGCU
..-----....................---.......---......((((.(.(.(((-(((((...(((..((((((((((....))))))))))))).))))))))).).)))) ( -20.50)
>DroSec_CAF1 31702 104 - 1
CA-----UUCCUAUUCCCCGAACUAUA---ACCCUCA---CAAUCCAGCUGCACUCUC-AAAGCCGCUUGUCAAAGUUAAUUUCGUAAUUAAUUUUCAAUGCUUUGAGGCGAGGCU
..-----....................---.......---......((((.(.(.(((-(((((...(((..((((((((((....))))))))))))).))))))))).).)))) ( -20.50)
>DroSim_CAF1 32101 104 - 1
CA-----UUCCCAUUCCCCGAACUAUA---ACCCUCA---CAAUCCAGCUGCACUCUC-AAAGCCGCUUGUCAAAGUUAAUUUCGUAAUUAAUUUUCAAUGCUUUGAGGCGAGGCU
..-----....................---.......---......((((.(.(.(((-(((((...(((..((((((((((....))))))))))))).))))))))).).)))) ( -20.50)
>DroEre_CAF1 31890 99 - 1
--------UUCCCUUUAC------AAUCUCAGCCUCAGCCCAAUCCAGCUGCACUC---AAAGCCGCUUGUCAAAGUUAAUUUCGUAAUUAAUUUUCAAUGCUUUGAGGCGAGGCU
--------..........------......(((((((((........)))((.(((---(((((...(((..((((((((((....))))))))))))).)))))))))))))))) ( -30.80)
>DroYak_CAF1 32638 104 - 1
UUAACCCUUACCCUUCCC------AAU---ACCCUUA---CUAUCCAGCUGCACUCUGAAAAGCCGCUUGUCAAAGUUAAUUUCGUAAUUAAUUUUCAAUGCUUUGAGGCGAGGCU
..................------...---.......---......((((((.(((...(((((...(((..((((((((((....))))))))))))).))))))))))..)))) ( -15.50)
>DroAna_CAF1 34660 85 - 1
---------CCUUUGCCACGAGC-------ACCCCCC---CU-----------UUGCC-AAGGCUGGUUGUCAAAGUUAAUUUUGUAAUUAAUUUUCAAUGCUUUGAAGCGAAGCU
---------....(((.....))-------)......---((-----------(((((-(((((..((((..((((((((((....))))))))))))))))))))..)))))).. ( -19.10)
>consensus
CA_____UUCCCAUUCCCCGAAC_AUA___ACCCUCA___CAAUCCAGCUGCACUCUC_AAAGCCGCUUGUCAAAGUUAAUUUCGUAAUUAAUUUUCAAUGCUUUGAGGCGAGGCU
.............................................................((((..(((((.(((((((((....)))))))))((((....))))))))))))) (-13.11 = -12.87 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:25 2006