Locus 6290

Sequence ID 2L_DroMel_CAF1
Location 17,520,941 – 17,521,061
Length 120
Max. P 0.505945
window10047

overview

Window 7

Location 17,520,941 – 17,521,061
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.33
Mean single sequence MFE -37.40
Consensus MFE -23.72
Energy contribution -23.50
Covariance contribution -0.22
Combinations/Pair 1.41
Mean z-score -1.32
Structure conservation index 0.63
SVM decision value -0.05
SVM RNA-class probability 0.505945
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17520941 120 + 22407834
UUUAACCGGUGCCCAGCAGAACUAUGCGCGAAAGUAUGUCAUAUCCAUAGAUCUUCUGGCCUUCGAUUACGAAGUUCUCACGGUGGAAGAGCCGCAAAGGCAGGGAUUAUCGGGACCCGA
......(((..(((.(((......)))((....)).......((((.....(((((((..(((((....)))))..).......))))))(((.....)))..))))....)))..))). ( -35.61)
>DroVir_CAF1 43205 120 + 1
CCUUACCGGCGCCCAGCAGAAUUAUGCGCGUAAAUAUGUCAUUUCCAUAGAUCUGCUGGCCUUUGACUAUGAGGUUCUGUCGCUGGAUGAGACACAAAUCAAAGGUGUAUCUGCGCCCGA
.....(.(((((((((((((.(((((.((((....))))......))))).))))))))(((((((...((..(((..(((....)))..))).))..))))))).......))))).). ( -38.60)
>DroPse_CAF1 40003 120 + 1
CCUCACUGGCGCCCAGCAGAACUAUGCACGAAAGUAUGUCAUUUCCAUAGAUCUGCUUGCCUUUGACUACGAGGUGCUCUCGCUGGAGGAGAACCAAAUCAAGGGUAUCACUGCACCCGC
..(((..((((...((((((.(((((...((((........))))))))).))))))))))..)))...((.(((((((((....)))).(((((........))).))...))))))). ( -37.20)
>DroGri_CAF1 49722 120 + 1
UCUGACCGGUGCCCAGCAGAAUUAUGCACGUAAAUAUGUGAUUUCCAUAGAUCUGUUGGCCUUUGACUAUGAGGUCCUGUCGCUGGAGGAAACACAAAUGGCAGGUACUCCGGCGCCCGA
.....(.(((((((((((((.((((((((((....))))).....))))).)))))))............(((..(((((((...(.(....).)...)))))))..))).)))))).). ( -42.10)
>DroAna_CAF1 46142 120 + 1
UUUGACUGGCGCUCAGCAGAACUACGCCCGAAAAUACGUAAUAUCCAUAGAUUUGCUAGCUUUCGACUACGAGGUCCUGUCGCUGGAAGAGACCCAAAUCCAGGGCCUUAAAGCGCCUGA
.......((((((...............(((((.((.((((.(((....)))))))))..))))).....(((((((((....(((.......)))....)))))))))..))))))... ( -33.70)
>DroPer_CAF1 40079 120 + 1
CCUCACUGGCGCCCAGCAGAACUAUGCACGAAAGUAUGUCAUUUCCAUAGAUCUGCUUGCCUUUGACUACGAGGUGCUCUCGCUGGAGGAGAACCAAAUCAAGGGUAUCACUGCACCCGC
..(((..((((...((((((.(((((...((((........))))))))).))))))))))..)))...((.(((((((((....)))).(((((........))).))...))))))). ( -37.20)
>consensus
CCUCACCGGCGCCCAGCAGAACUAUGCACGAAAAUAUGUCAUUUCCAUAGAUCUGCUGGCCUUUGACUACGAGGUCCUCUCGCUGGAGGAGACCCAAAUCAAGGGUAUAACUGCACCCGA
.....((((((((.((((((.(((((...((((........))))))))).)))))))))(((((....))))).......)))))................((((........)))).. (-23.72 = -23.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:21 2006