Locus 6289

Sequence ID 2L_DroMel_CAF1
Location 17,515,827 – 17,515,929
Length 102
Max. P 0.596373
window10046

overview

Window 6

Location 17,515,827 – 17,515,929
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.75
Mean single sequence MFE -21.97
Consensus MFE -17.73
Energy contribution -17.87
Covariance contribution 0.14
Combinations/Pair 1.25
Mean z-score -1.32
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.596373
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17515827 102 - 22407834
AAACUAUACACAAGCCAAAAUUCUGUUUCUCCACCACCAAAAUUGUUGUACUCACCUGCGUGAGCAGAGUGUGUGAUAGUAACAUGUCUGUCUCCUUUUGGU
.............(((((((.............................((.(((((((....)))).))).))(((((........)))))...))))))) ( -23.90)
>DroSec_CAF1 32302 102 - 1
AAACUCUGCACAAGCCAAAAUUCUUUUUCUCCAUUACCAAAAUUGUUGUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAGCAUGUCUGUCUCCUUUUGGU
.............(((((((.....................((((((((((..((((((....)))).)))))))))))).(((....)))....))))))) ( -24.10)
>DroSim_CAF1 32202 102 - 1
AAACUCUACACAAGCCAAACUUCUUUUUCUCCACCACCAAAAUUGUUGUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAACAUGUCUGUCUCCUUUUGGU
...................................(((((((.....((((..((((((....)))).))))))(((((........)))))...))))))) ( -23.00)
>DroEre_CAF1 33276 97 - 1
GA-AUCUACUCAAGCUAAAAUUCUU-UUCUACACCACCAAAA---UUUUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAACAUGUCCGUCUCCUUUUGGU
..-......................-.........(((((((---.....(.(((((((....)))).))).).((((......)))).......))))))) ( -19.50)
>DroYak_CAF1 33038 98 - 1
AA-AUCUACUCAAGCUAAAGUUCUUUUUCUCCACCACCAAUG---UUGUACUCACCUGCGUAAGCAGAGUGUGCGAAAGUAACAUGUCUGUCUCCUUUUGGU
..-................................(((((..---.......(((((((....)))).)))(((....)))................))))) ( -18.30)
>DroPer_CAF1 35317 91 - 1
AA-AACUAUGCA-------AUUCUCUAAAAGCAUGAUCAGAA---AUGGACUUACCUGUGUCAGCAGAGUGUGCGAGAGCAACAUGUCCGUCUCCUUUUGGU
..-...(((((.-------...........)))))(((((((---((((((....((((....)))).((((((....)).))))))))))....))))))) ( -23.00)
>consensus
AA_AUCUACACAAGCCAAAAUUCUUUUUCUCCACCACCAAAA___UUGUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAACAUGUCUGUCUCCUUUUGGU
...................................(((((((........(.(((((((....)))).))).).(((((........)))))...))))))) (-17.73 = -17.87 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:20 2006