| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,499,605 – 17,499,698 |
| Length | 93 |
| Max. P | 0.718969 |
| Location | 17,499,605 – 17,499,698 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 79.46 |
| Mean single sequence MFE | -12.43 |
| Consensus MFE | -9.30 |
| Energy contribution | -8.63 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17499605 93 - 22407834 CCUAACCACCCAACCAUCGAAUCCCCGAAUCACAAAAAGCAUCCAAAGGCC-CUUCUUAAUGAUGCCAAAUGCUCGAAGGCAAUAAAUUAGCAA ................(((......)))..........((.......(((.-..((.....)).)))...((((....))))........)).. ( -11.60) >DroSec_CAF1 16238 77 - 1 CC--------CAACCA--------CCGAAUCACAAAAAGCAUCCAAAGGCC-CUUCUUAAUGAUGCCAAAUGCUCGAAGGCAAUAAAUUAGCAA ..--------......--------..............((.......(((.-..((.....)).)))...((((....))))........)).. ( -10.10) >DroSim_CAF1 16405 85 - 1 CCCAACCACCCAACCA--------CCGAAUCACAAAAAGCAUCCAAAGGCC-CUUCUUAAUGAUGCCAAAUGCUCGAAGGCAAUAAAUUAGCAA ................--------..............((.......(((.-..((.....)).)))...((((....))))........)).. ( -10.10) >DroEre_CAF1 17080 89 - 1 CCCAACCACCCAGCCACCGA----CCGAAUCACAAAAGGCAUCCAGAGGCC-CUCCUUAAUGAUGCCAAAUGCUCGAAGGCAAUAAAUUAGCAA ............(((..(((----.((.....)....((((((..((((..-..))))...))))))....).)))..)))............. ( -18.60) >DroYak_CAF1 16649 78 - 1 CCCAACCA----------------CCGAAUCACAAAAGGCAUCCAGAGGCCCCUUCUUAAUGAUGCCAAAUGCUCGAAGGCAAUAAGUUAGCAA ........----------------.............((((((.(((((...)))))....))))))...((((....))))............ ( -14.50) >DroAna_CAF1 17772 77 - 1 CAAAACCACCCAACCA--------CCGA--------AACCAUUGAAGAGCC-UGCCCUAAUGAUGCCAAAUGCCUGAGGGCAAUAAAUUAGCAA ................--------....--------...............-((((((......((.....))...))))))............ ( -9.70) >consensus CCCAACCACCCAACCA________CCGAAUCACAAAAAGCAUCCAAAGGCC_CUUCUUAAUGAUGCCAAAUGCUCGAAGGCAAUAAAUUAGCAA ......................................(((((..((((.....))))...)))))....((((....))))............ ( -9.30 = -8.63 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:10 2006