Locus 6280

Sequence ID 2L_DroMel_CAF1
Location 17,483,311 – 17,483,405
Length 94
Max. P 0.801240
window10035

overview

Window 5

Location 17,483,311 – 17,483,405
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.96
Mean single sequence MFE -27.43
Consensus MFE -19.66
Energy contribution -20.58
Covariance contribution 0.92
Combinations/Pair 1.25
Mean z-score -1.79
Structure conservation index 0.72
SVM decision value 0.62
SVM RNA-class probability 0.801240
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17483311 94 - 22407834
GCCGUGGUCAGGCAGUUUCAGGAGCCAAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAAAACGAUUACGGCAAGGUAAU--CCAUAACAAAAGGG---
(((((((((.(((..........)))....(((((...(((((((...)))))))...))))))))))))))..((....--))............--- ( -31.20)
>DroPse_CAF1 241 89 - 1
GCCGUGGUGCGGCAGUAUCAGGAGCCAAAUGUGUUUAAGGGCUUUUUCGAAUCCUGGCAGAAUAACUACGGAAAGGUAAG--CU-UA----GAUAU---
(((.((((((....)))))).).)).....(((((((((.(((((((((.....(((........))))))))))))...--))-))----)))))--- ( -23.50)
>DroSec_CAF1 245 94 - 1
GCCGUGGUCAGGCAGUUUCAGGAGCCGAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAGAAUGAUUACGGCAAGGUAAA--CCAUAACAAAAGGU---
((((((((((..(.((..(((((..((((.(..((.....))..)))))..))))))).)..))))))))))..((....--))............--- ( -30.70)
>DroSim_CAF1 249 94 - 1
GCCGUGGUCAGGCAGUUUCAGGAGCCGAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAGAAUGAUUACGGCAAGGUAAA--CCAUAACAAAAGGU---
((((((((((..(.((..(((((..((((.(..((.....))..)))))..))))))).)..))))))))))..((....--))............--- ( -30.70)
>DroEre_CAF1 245 91 - 1
GCCGUGGUCAGGCAGUUUCAGGAGCCAAAUGUUUUUAAGGGAUUCUUUGAGUCCUGGCAGAACGAUUACGGCAAGGUAAAUA-----AAAAAAGGU---
(((((((((.(((..........)))....(((((...(((((((...)))))))...))))))))))))))..........-----.........--- ( -30.20)
>DroAna_CAF1 233 97 - 1
GCGGUGGUCCGACAGUUUCAGGAACCUAAUGUCUUCAAGGGUUUCUUCGAGUCGUGGCAGAAUGAUUAUGGAAAGGUAAC--UAAUUAUAUUUGAAUUU
.(((....)))((..((((((((((((..((....)).)))))))....((((((......)))))).)))))..))...--................. ( -18.30)
>consensus
GCCGUGGUCAGGCAGUUUCAGGAGCCAAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAGAAUGAUUACGGCAAGGUAAA__CCAUAACAAAAGGU___
(((((((((.(((..........)))....(((((...(((((((...)))))))...))))))))))))))........................... (-19.66 = -20.58 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:08 2006