| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,449,931 – 17,450,048 |
| Length | 117 |
| Max. P | 0.514235 |
| Location | 17,449,931 – 17,450,048 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.58 |
| Mean single sequence MFE | -29.26 |
| Consensus MFE | -14.94 |
| Energy contribution | -13.69 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.51 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17449931 117 - 22407834 UAAAUGCACACCUCCUUUUUGUGCAGUACACGCUGGUACCAUUCCCGCACCUGGCGGUACUUGUUAUCUCUGCCCUCCGCCAGUAUCACUUCCUGGAUUAGCUGGUCCUUUUCCGCC ....((((((.........))))))...((.((((((.(((.........(((((((.....((.......))...)))))))..........)))))))))))............. ( -27.91) >DroSec_CAF1 14089 117 - 1 GAAAUGCACUGAUCCUUUUCGUGCAGCAUAUGCUGGUACCAUUCCCUCACCUGGCGGUACUUGUUAUCUCUGCUCUCCGCCAGUAUCACUUCCUGGGUGAGCUGGUUCUUUUCCGUC (((((((((.((......)))))))(((...((.((((((....((......)).)))))).))......))).....((((((.(((((.....)))))))))))...)))).... ( -31.80) >DroSim_CAF1 14297 117 - 1 GAAAUGCACUGAUCCUUUUCGUGCAGCAUAUGCUGGUACCAUUCCCUCACCUGGCGGUACUUGUUAUCUCUGCUCUCCGCCAGUAUCACUUCCUGGAUGAGCUGGUUCUUUUCCCCC ((((.((.((.((((.....(((((((....))))...............(((((((.....((.......))...)))))))...))).....)))).))...))...)))).... ( -29.20) >DroEre_CAF1 14233 117 - 1 UGAAUGCGUUCAUUCUUUUUAUCCAGUUGAUGCUGGUACCAGUCCCUCACCUGGCGGUACUUGUCAUCUCUGCUCUCCGCCAGCACCACUUCCUGGAUGAGCUCCUCCUUUUCCGCC .(((((....)))))..(((((((((.(((.((((....))))...))).(((((((.....((.......))...))))))).........)))))))))................ ( -29.60) >DroYak_CAF1 14826 117 - 1 UGAAUGCACUCCUUCUUUUCAUCCAGUUGAUGCUGGUACCAGUCCCUUACCUGGCGGUACUUGGCUUCUCUGCUCUCCGCCAGCACCACUUCCUGGAUGAGCUGCUCCUUUUCCUCC .....((((((...........(((((....)))))..((((........(((((((.....(((......)))..))))))).........))))..))).)))............ ( -32.23) >DroAna_CAF1 13098 117 - 1 CGAAUUAGUUCGUCCUUGCGGGCCAUUUCCCGCUGAUACCACUCCUGCGCCUUCUUGGUCUUGGCCUCCUUGCCCUCCAUGAUGACCACCUCGCUGAUCAGCUGCUCAUUCUCGCUC .((((.(((..((((....))))........((((((.........(((......(((((..(((......)))(.....)..)))))...)))..)))))).))).))))...... ( -24.80) >consensus UAAAUGCACUCAUCCUUUUCGUCCAGUACAUGCUGGUACCAUUCCCUCACCUGGCGGUACUUGUCAUCUCUGCUCUCCGCCAGUACCACUUCCUGGAUGAGCUGCUCCUUUUCCGCC ....(((................((((....))))................((((((...................))))))))).........(((..((......))..)))... (-14.94 = -13.69 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:55 2006