Locus 6268

Sequence ID 2L_DroMel_CAF1
Location 17,434,860 – 17,434,954
Length 94
Max. P 0.576450
window10016

overview

Window 6

Location 17,434,860 – 17,434,954
Length 94
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 84.11
Mean single sequence MFE -18.75
Consensus MFE -13.51
Energy contribution -13.23
Covariance contribution -0.27
Combinations/Pair 1.23
Mean z-score -1.98
Structure conservation index 0.72
SVM decision value 0.09
SVM RNA-class probability 0.576450
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17434860 94 - 22407834
GUCAAAU------AGCAUCAUAUAUAUUUGAUGU---UUUCUUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGCCCCCGAUGACGUAUUACUCGAAUAGAC
(((....------(((((((........))))))---)...((((((((((..(((...--.)))......((((((....)))))).))).))).))))..))) ( -19.00)
>DroSec_CAF1 23165 95 - 1
GUCAAAU------AGCAUCAUAUAUAUUUGAUGUG--UUUUUUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGGCCCCGAUGACGUAUUACUCGAAUAGAC
.......------.((((((........))))))(--(((.((((((((((..(((...--.)))......((((((....)))))).))).))).)))).)))) ( -21.80)
>DroSim_CAF1 24745 94 - 1
GUCAAAU------AGCAUCAUAUAUAUUUGAUGU---UUUUUUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGGCCCCGAUGACGUAUUACUCGAAUAGAC
(((....------(((((((........))))))---)...((((((((((..(((...--.)))......((((((....)))))).))).))).))))..))) ( -21.30)
>DroEre_CAF1 22682 95 - 1
GUCAAAUCCUCAAAUCAUCAU--AUAUUUGAUGU---U---UUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGCCUCUGAUGACGUAUUACUCGAAUAGAC
(((............(((((.--.....))))).---.---((((((((((..(((...--.)))......((((((....)))))).))).))).))))..))) ( -15.60)
>DroYak_CAF1 23188 89 - 1
GUCAA--------AUCAUCAU--AUAUUUGAUGU---UUU-UUUGGUAUACCAAAGACU--ACUUAACAAAUCAUCGCCUCAGAUGACGUAUUACUUGAAUAGAC
(((..--------..(((((.--.....))))).---...-(((((....)))))))).--..........(((((......))))).................. ( -16.30)
>DroAna_CAF1 24598 93 - 1
GUCAAAU------AGUGU---UCGUAUUUGACGUAUUUUUUUUCGGUAUAC-AAAGACUUAAUUGAACUAGUCAUCGC--CCGAUGAUGUAUUAAUCGAAUAGAC
(((((((------(....---...)))))))).....(((.((((((((((-.....(......).....((((((..--..))))))))))..)))))).))). ( -18.50)
>consensus
GUCAAAU______AGCAUCAUAUAUAUUUGAUGU___UUUUUUCGGUAUACCAAAGACU__ACUUAACAAAUCAUCGCCCCCGAUGACGUAUUACUCGAAUAGAC
(((............(((((........)))))........(((((.((((..(((......)))......((((((....)))))).))))...)))))..))) (-13.51 = -13.23 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:50 2006