Locus 626

Sequence ID 2L_DroMel_CAF1
Location 1,839,500 – 1,839,613
Length 113
Max. P 0.599032
window1022

overview

Window 2

Location 1,839,500 – 1,839,613
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 84.27
Mean single sequence MFE -17.22
Consensus MFE -12.02
Energy contribution -12.30
Covariance contribution 0.28
Combinations/Pair 1.14
Mean z-score -2.32
Structure conservation index 0.70
SVM decision value 0.13
SVM RNA-class probability 0.599032
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1839500 113 - 22407834
UAAAUCAAACAUUUCACUUGGCGCGGCCCAAAAAUAAACAGAAAACAGCAACAACAGCAGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA
.........(((((((((((((...))).................(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10)
>DroSec_CAF1 7664 113 - 1
UAAAUCAAACAUUUCACUUGGCGCGGCCCGAAAAUAAACAGAAAACAGCAACAACAGCACGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA
.........(((((((((((((...))).................(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10)
>DroEre_CAF1 7915 111 - 1
UAAAUCAAACAUUUCACUUGGCGCGGCCCGAAAAUAAAU--AAAACAGCAACAACAGCGGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA
.........(((((((((((((...)))...........--....(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10)
>DroWil_CAF1 12254 93 - 1
UAAAUCAAACAUUUUACUUGGCGCAGCCCA--AAUAAACAGA------------------GGCAUAAACAAAAAUAUUGUAGAGAUGUUGCAAUAAUAAAAGUGAAAAUGAAA
.........((((((((((......((((.--........).------------------)))...........((((((((.....))))))))....))))).)))))... ( -14.20)
>DroYak_CAF1 7983 111 - 1
UAAAUCAAACAUUUCACUUGGCGUGGCCCAAAAAUAAAU--AAAACAGCAACAACAGCAGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA
.........(((((((((((((...)))...........--....(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10)
>DroAna_CAF1 8284 95 - 1
UAAAUCAAAUAUUUCACUUGGCGCAGCCCUAAAGUAAACAAACAA------------------AGCAACAAAAAUAUUGUAGAAAUGUUGGAAUAAUAAAAGUGAAAAUGAAA
...........(((((((((((...)))............((((.------------------..(.((((.....)))).)...))))..........))))))))...... ( -12.70)
>consensus
UAAAUCAAACAUUUCACUUGGCGCGGCCCAAAAAUAAACAGAAAACAGCAACAACAGCAGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA
.........(((((((((((((...)))................................(((((..((((.....))))....)))))..........))))).)))))... (-12.02 = -12.30 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:18 2006