Locus 6252

Sequence ID 2L_DroMel_CAF1
Location 17,357,275 – 17,357,394
Length 119
Max. P 0.797312
window9990

overview

Window 0

Location 17,357,275 – 17,357,394
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.88
Mean single sequence MFE -29.62
Consensus MFE -26.18
Energy contribution -26.46
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.34
Structure conservation index 0.88
SVM decision value 0.61
SVM RNA-class probability 0.797312
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17357275 119 + 22407834
UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGCCAAUAUUUGGGUCAACAAGUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA-AAAUGGGGCAAGAACUAAAGGUGAACAA
((.((((....(((((((.((((((..(((..((.(((...(((((......)))))..).)).))..))).)))))).))...)))))..-...)))).)).................. ( -26.90)
>DroSec_CAF1 59126 119 + 1
UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGUUAAUAUUUGGGUCAACAAAUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA-AAAUGGGGCAAGAACUAAAGGUAAGCAA
((.((((....(((((((.((((((..(((..((.(((...(((((......)))))...))).))..))).)))))).))...)))))..-...)))).)).................. ( -26.70)
>DroSim_CAF1 59729 119 + 1
UGACCCAACAAGUUGUUGAGUGCUCAAGGACCGGUGCCAAUAUUUGGGUCAACAAGUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA-AAAUGGGGCAAGAACUAAAGGUGAGCAA
((((((((.....(((((.(..((........))..)))))).))))))))..........((((((...(((.(....)....((..((.-...))..)).....)))...)))))).. ( -30.30)
>DroEre_CAF1 56907 119 + 1
UGACCCAACAAGUUGUUGAAUGCUCAAGGACCUGUGGCAAUAUUUGGGUCAACAAGUCGCAGCUCACAUCUGGAGCACACAAAAGCACUAA-AAAUGGGGCAGCACCUAAAGGUGAGUAA
((((((((((.(((.((((....)))).))).))).........)))))))..........((((((...(((.((........)).))).-...((((......))))...)))))).. ( -32.60)
>DroYak_CAF1 53303 120 + 1
UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGCCAAUAUUUGGGUCAACAAGUCAGAGCUCACAUCUGGAGUACACAAAUGCAAUAAAAAAUGGGGCAGCAACUAAAGGUGAGCAU
((((((((((.(((.((((....)))).))).))).........)))))))..........((((((..((..(((.......(((..((.....))..)))...)))..)))))))).. ( -31.60)
>consensus
UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGCCAAUAUUUGGGUCAACAAGUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA_AAAUGGGGCAAGAACUAAAGGUGAGCAA
((((((((((.(((.((((....)))).))).))).........)))))))..........((((((.......((........)).........(((........)))...)))))).. (-26.18 = -26.46 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:25 2006