Locus 625

Sequence ID 2L_DroMel_CAF1
Location 1,838,037 – 1,838,127
Length 90
Max. P 0.697697
window1021

overview

Window 1

Location 1,838,037 – 1,838,127
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.42
Mean single sequence MFE -28.89
Consensus MFE -22.23
Energy contribution -22.15
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -1.21
Structure conservation index 0.77
SVM decision value 0.34
SVM RNA-class probability 0.697697
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1838037 90 - 22407834
-GCCCCCUUUCCACCCACUCCAC---------CCAUAAAAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG
-(((.(((((.......((((..---------........((.((((....))))))........(((........))))))).......))))).))). ( -26.04)
>DroSec_CAF1 6266 81 - 1
-GCCCCCUUUCCACCCA------------------CAAGAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG
-(((.........(((.------------------.....((.((((....))))))........(((........))))))(((........)))))). ( -24.80)
>DroSim_CAF1 6359 81 - 1
-GCCCCCUUUCCACCCA------------------CAAGAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG
-(((.........(((.------------------.....((.((((....))))))........(((........))))))(((........)))))). ( -24.80)
>DroEre_CAF1 6509 89 - 1
-GCCCCCUUUGCACCUACUCCAC---------CCAC-AGCGCCCCCUUUCCGGGGGCAAACUGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG
-(((.((((((.((........(---------((.(-(((((((((.....))))))....((.....))......)))))))....)))))))).))). ( -34.00)
>DroYak_CAF1 6487 99 - 1
-GCCCCCUUUGCACCCACUCCAGCCACUCCACCCACAAGCGCCCCCUUCCCGGGGGCAAACUGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG
-(((.((((((.((...(((((((................((((((.....))))))....((.....))......)))))))....)))))))).))). ( -35.90)
>DroAna_CAF1 6566 86 - 1
UGCCACAUUUUCGCCCAUUCCUU---------UCA-----GCUGCAGCCCUUAGGGCAAAGCCAAAGCCAACAUUAGCUGGGGCCAUGUUGAAGGCGGCG
...........((((.....(((---------(((-----((....((((...))))...(((..(((........)))..)))...)))))))).)))) ( -27.80)
>consensus
_GCCCCCUUUCCACCCACUCCA__________CCACAAGAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG
.(((.........(((........................((.((((....))))))........(((........))))))(((........)))))). (-22.23 = -22.15 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:17 2006