Locus 6242

Sequence ID 2L_DroMel_CAF1
Location 17,346,798 – 17,346,889
Length 91
Max. P 0.570276
window9975

overview

Window 5

Location 17,346,798 – 17,346,889
Length 91
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 82.01
Mean single sequence MFE -19.32
Consensus MFE -13.06
Energy contribution -13.13
Covariance contribution 0.07
Combinations/Pair 1.19
Mean z-score -1.55
Structure conservation index 0.68
SVM decision value 0.07
SVM RNA-class probability 0.570276
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17346798 91 - 22407834
GCGAGCAACGUGGCGUAUACACAACGCU----CACCGCAAACUAACACAG---GC-ACA--CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA
(((((..(((((((((.......)))).----....((............---))-...--)))))....)))))..((((((.......))))))..... ( -20.70)
>DroVir_CAF1 60165 79 - 1
GCGGCCAACGUGGCGUAUACACAACGCA----CAA---------------CAUGCAACG--CGCAUAUUUUUCGCCUUAUGAAUUCGUAUUUUAUAUGAA-
..(((....((.((((.......)))).----..)---------------)((((....--.)))).......))).......(((((((...)))))))- ( -15.40)
>DroSec_CAF1 48718 95 - 1
GCGAGCAACGUGGCGUAUACACAACGCUCACUCACCGCAAACUAACACAG---GC-ACA--CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA
(((((..(((((((((.......)))).........((............---))-...--)))))....)))))..((((((.......))))))..... ( -20.70)
>DroEre_CAF1 45134 93 - 1
GCGAGCAACGUGGCGUAUACACAACGCU----AACCGCAAACUAACACAG---GC-ACACACACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA
(((((..(((((((((.......)))).----....((............---))-.....)))))....)))))..((((((.......))))))..... ( -20.70)
>DroYak_CAF1 42412 91 - 1
GCGAGCAACGUGGCGUGUACACAACGCU----CACCGCAAACUAACACAG---GC-ACA--CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA
(((((..(((((..((((.......((.----....))...((.....))---))-)).--)))))....)))))..((((((.......))))))..... ( -21.60)
>DroAna_CAF1 51016 93 - 1
GCGAGCAACGUGGCGUAUACACAACACA----CACCGCAAACUCCCAUAC---AU-CUCGACGUAUAUUUCUCGCCUUAUGAAUUCGCAUUUCAUAUGAAA
(((((....((((.((...........)----).))))........((((---..-......))))....)))))..((((((.......))))))..... ( -16.80)
>consensus
GCGAGCAACGUGGCGUAUACACAACGCU____CACCGCAAACUAACACAG___GC_ACA__CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA
(((((..(((((((((.......)))).........(........)...............)))))....)))))..((((((.......))))))..... (-13.06 = -13.13 +   0.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:10 2006